- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : not classified & original description: none
Gene families : OG0005967 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005967_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00065p00020910 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g30825,... | 0.04 | OrthoFinder output from all 47 species | |
| AT4G30825 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g016371 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g14519 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g10911 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g21865 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.16G031400.1 | Ceric.16G031400 | not classified & original description: pacid=50589889... | 0.06 | OrthoFinder output from all 47 species | |
| Dac_g39665 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os09g25550.1 | LOC_Os09g25550 | Pentatricopeptide repeat-containing protein At4g30825,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_187850g0010 | No alias | Pentatricopeptide repeat-containing protein At4g30825,... | 0.05 | OrthoFinder output from all 47 species | |
| Ppi_g33644 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0063.g015623 | No alias | not classified & original description: CDS=1-2238 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g13761 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g25071 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| MF | GO:0008168 | methyltransferase activity | IEP | HCCA |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | HCCA |
| CC | GO:0009507 | chloroplast | IEP | HCCA |
| CC | GO:0009536 | plastid | IEP | HCCA |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | HCCA |
| CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 668 | 711 |
| IPR033443 | PPR_long | 134 | 269 |
| IPR002885 | Pentatricopeptide_repeat | 528 | 557 |
| IPR002885 | Pentatricopeptide_repeat | 460 | 485 |
| IPR002885 | Pentatricopeptide_repeat | 494 | 519 |
| IPR002885 | Pentatricopeptide_repeat | 349 | 376 |
| IPR002885 | Pentatricopeptide_repeat | 586 | 643 |
| IPR002885 | Pentatricopeptide_repeat | 68 | 108 |
| No external refs found! |