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  5. Nbi_g19479

Nbi_g19479


Description : not classified & original description: none


Gene families : OG0011820 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011820_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g19479

Target Alias Description ECC score Gene Family Method Actions
Aop_g23794 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.31G055900.1 Ceric.31G055900 not classified & original description: pacid=50574845... 0.04 OrthoFinder output from all 47 species
Dde_g42902 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07391 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 778 825
IPR002885 Pentatricopeptide_repeat 338 386
IPR002885 Pentatricopeptide_repeat 439 486
IPR002885 Pentatricopeptide_repeat 675 724
IPR002885 Pentatricopeptide_repeat 540 588
IPR002885 Pentatricopeptide_repeat 616 642
IPR002885 Pentatricopeptide_repeat 644 670
IPR002885 Pentatricopeptide_repeat 884 913
IPR002885 Pentatricopeptide_repeat 753 776
IPR002885 Pentatricopeptide_repeat 212 236
IPR002885 Pentatricopeptide_repeat 241 270
IPR002885 Pentatricopeptide_repeat 141 183
No external refs found!