AT2G46830 (CCA1)


Aliases : CCA1

Description : circadian clock associated 1


Gene families : OG_01_0007396 (Gene family) Phylogenetic Tree(s): OG0007396_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT2G46830
Cluster HCCA cluster: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01027456001 No alias 27.3.26 RNA.regulation of transcription.MYB-related... 0.11 Gene family
Smo166821 PACid_15419362 No description available 0.07 Gene family
Solyc10g005080.3.1 Solyc10g005080.3 27.3.26 RNA.regulation of transcription.MYB-related... 0.14 Gene family
Zm00001d024546 GRMZM2G474769 27.3.26 RNA.regulation of transcription.MYB-related... 0.05 Gene family
Zm00001d049543 GRMZM2G014902 27.3.26 RNA.regulation of transcription.MYB-related... 0.06 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IDA Arabidopsis.org
MF GO:0003700 DNA-binding transcription factor activity ISS Arabidopsis.org
MF GO:0005515 protein binding IPI Arabidopsis.org
CC GO:0005634 nucleus IDA Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006355 regulation of transcription, DNA-templated RCA Arabidopsis.org
BP GO:0007623 circadian rhythm IMP Arabidopsis.org
BP GO:0007623 circadian rhythm IGI Arabidopsis.org
BP GO:0007623 circadian rhythm IEP Arabidopsis.org
BP GO:0007623 circadian rhythm RCA Arabidopsis.org
BP GO:0007623 circadian rhythm TAS Arabidopsis.org
BP GO:0009409 response to cold IGI Arabidopsis.org
BP GO:0009639 response to red or far red light RCA Arabidopsis.org
BP GO:0009651 response to salt stress IEP Arabidopsis.org
BP GO:0009651 response to salt stress RCA Arabidopsis.org
BP GO:0009723 response to ethylene IEP Arabidopsis.org
BP GO:0009723 response to ethylene RCA Arabidopsis.org
BP GO:0009733 response to auxin IEP Arabidopsis.org
BP GO:0009733 response to auxin RCA Arabidopsis.org
BP GO:0009737 response to abscisic acid IEP Arabidopsis.org
BP GO:0009737 response to abscisic acid RCA Arabidopsis.org
BP GO:0009739 response to gibberellin IEP Arabidopsis.org
BP GO:0009739 response to gibberellin RCA Arabidopsis.org
BP GO:0009751 response to salicylic acid IEP Arabidopsis.org
BP GO:0009751 response to salicylic acid RCA Arabidopsis.org
BP GO:0009753 response to jasmonic acid IEP Arabidopsis.org
BP GO:0009753 response to jasmonic acid RCA Arabidopsis.org
BP GO:0010243 response to organonitrogen compound IEP Arabidopsis.org
BP GO:0010264 myo-inositol hexakisphosphate biosynthetic process RCA Arabidopsis.org
MF GO:0019904 protein domain specific binding ISS Arabidopsis.org
BP GO:0042752 regulation of circadian rhythm RCA Arabidopsis.org
BP GO:0042754 negative regulation of circadian rhythm IMP Arabidopsis.org
BP GO:0043496 regulation of protein homodimerization activity IMP Arabidopsis.org
MF GO:0043565 sequence-specific DNA binding IDA Arabidopsis.org
BP GO:0045892 negative regulation of transcription, DNA-templated IMP Arabidopsis.org
BP GO:0045893 positive regulation of transcription, DNA-templated IMP Arabidopsis.org
BP GO:0046686 response to cadmium ion IEP Arabidopsis.org
BP GO:0048574 long-day photoperiodism, flowering IGI Arabidopsis.org
BP GO:0048574 long-day photoperiodism, flowering RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001005 SANT/Myb 24 67
No external refs found!