AT1G13800


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0010121 (Archaeplastida) Phylogenetic Tree(s): OG_01_0010121_tree ,
OG_02_0010541 (LandPlants) Phylogenetic Tree(s): OG_02_0010541_tree ,
OG_03_0010187 (SeedPlants) Phylogenetic Tree(s): OG_03_0010187_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G13800
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
Solyc05g012920.3.1 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.03 Archaeplastida
Zm00001e039987_P001 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.02 Archaeplastida
AMTR_s00044p00087550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g26790,... 0.02 LandPlants
GSVIVT01015849001 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.02 LandPlants
Solyc05g012920.3.1 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.04 LandPlants
Zm00001e039987_P001 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.03 LandPlants
AMTR_s00044p00087550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g26790,... 0.02 SeedPlants
GSVIVT01015849001 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.02 SeedPlants
Solyc05g012920.3.1 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.04 SeedPlants
Zm00001e018562_P001 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.01 SeedPlants
Zm00001e039987_P001 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 757 787
IPR002885 Pentatricopeptide_repeat 150 170
IPR002885 Pentatricopeptide_repeat 602 629
IPR002885 Pentatricopeptide_repeat 363 389
IPR002885 Pentatricopeptide_repeat 313 356
IPR002885 Pentatricopeptide_repeat 696 741
IPR002885 Pentatricopeptide_repeat 464 511
IPR002885 Pentatricopeptide_repeat 395 442
IPR002885 Pentatricopeptide_repeat 640 678
IPR002885 Pentatricopeptide_repeat 794 843
No external refs found!