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  5. Nbi_g19074

Nbi_g19074


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g19074
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00110050 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AMTR_s00029p00235510 OTP84,... Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
AMTR_s00032p00176600 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Adi_g003297 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101185 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101200 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36220 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06402 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18504 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18510 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18999 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54961 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55287 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03233 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04252 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07674 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g08252 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09708 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11871 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16103 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16182 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16531 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g16821 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g16838 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g17269 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18367 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g20887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g22058 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23486 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23571 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g26859 CRR22 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g27463 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28154 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
    1. Home
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    3. >Aop_g28321
    		 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Aop_g28413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Aop_g28718 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Aop_g62402 OSB3 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.03 OrthoFinder output from all 47 species
    Aop_g67763 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Aop_g67765 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Aop_g67898 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
    Aop_g69562 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
    Aspi01Gene34758.t1 Aspi01Gene34758 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
    Azfi_s0005.g009069 CRR22 not classified & original description: CDS=1-1992 0.03 OrthoFinder output from all 47 species
    Azfi_s0032.g024865 No alias not classified & original description: CDS=234-3254 0.03 OrthoFinder output from all 47 species
    Azfi_s0032.g024956 No alias not classified & original description: CDS=109-3012 0.03 OrthoFinder output from all 47 species
    Cba_g20751 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Cba_g29527 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Cba_g33342 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Cba_g38005 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Cba_g67481 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Ceric.13G069100.1 CRR22, Ceric.13G069100 not classified & original description: pacid=50635982... 0.02 OrthoFinder output from all 47 species
    Ceric.22G078800.1 Ceric.22G078800 not classified & original description: pacid=50613807... 0.02 OrthoFinder output from all 47 species
    Ceric.23G059700.1 CRR22, Ceric.23G059700 not classified & original description: pacid=50609689... 0.03 OrthoFinder output from all 47 species
    Ceric.33G060200.1 Ceric.33G060200 not classified & original description: pacid=50607485... 0.02 OrthoFinder output from all 47 species
    Ceric.34G039000.1 Ceric.34G039000 not classified & original description: pacid=50623583... 0.03 OrthoFinder output from all 47 species
    Cpa|evm.model.tig00021035.24 No alias Pentatricopeptide repeat-containing protein At1g63080,... 0.02 OrthoFinder output from all 47 species
    Dac_g05692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dac_g09346 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dac_g18405 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dac_g18431 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dac_g18580 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dac_g18832 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
    Dac_g19077 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dac_g19095 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Dac_g21951 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dac_g25215 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dac_g25217 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dac_g30262 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
    Dac_g30276 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dac_g30281 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Dac_g30287 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dac_g30436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dac_g31750 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Dac_g32635 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Dac_g33014 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dac_g36005 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dac_g36036 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Dac_g38568 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dac_g42987 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dac_g43229 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Dac_g43253 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dac_g44030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dcu_g43258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dde_g03977 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Dde_g13628 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dde_g16071 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Dde_g18184 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
    Dde_g22365 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dde_g23579 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Dde_g23679 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dde_g23809 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Dde_g28695 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Dde_g30703 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dde_g37552 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Dde_g46549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Dde_g50436 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
    GSVIVT01000178001 No alias RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
    GSVIVT01008965001 No alias Pentatricopeptide repeat-containing protein At4g18520,... 0.03 OrthoFinder output from all 47 species
    GSVIVT01009407001 EMB2261 Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
    GSVIVT01015466001 LPA66 Pentatricopeptide repeat-containing protein At5g48910... 0.04 OrthoFinder output from all 47 species
    GSVIVT01029254001 OSB4 RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
    LOC_Os01g01115.1 LOC_Os01g01115 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
    LOC_Os01g19380.1 LOC_Os01g19380 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
    LOC_Os03g43420.1 OSB1, LOC_Os03g43420 ssDNA-binding protein (OSB) 0.02 OrthoFinder output from all 47 species
    LOC_Os05g49740.1 EMB2744, LOC_Os05g49740 Pentatricopeptide repeat-containing protein At5g39680... 0.03 OrthoFinder output from all 47 species
    LOC_Os12g36620.1 LOC_Os12g36620 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
    Len_g04830 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Len_g13048 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
    Len_g18890 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Len_g22535 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Len_g44147 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
    Lfl_g05656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Lfl_g06639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Lfl_g07436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Lfl_g07817 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Lfl_g08056 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
    Lfl_g28067 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Lfl_g32904 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    MA_72886g0010 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.03 OrthoFinder output from all 47 species
    Msp_g28793 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Msp_g34215 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Msp_g35215 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Msp_g45695 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Msp_g46044 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Nbi_g07674 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Ore_g12907 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
    Ore_g16142 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
    Ore_g18652 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
    Ore_g20288 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Ore_g40875 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Ore_g43611 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
    Pir_g20473 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Pir_g57720 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Ppi_g03900 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Ppi_g04637 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Ppi_g07011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Ppi_g11016 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Ppi_g12011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Ppi_g15472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Ppi_g18869 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
    Ppi_g22239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Ppi_g53979 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Ppi_g53982 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Ppi_g57818 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
    Sacu_v1.1_s0007.g003613 No alias not classified & original description: CDS=279-3914 0.03 OrthoFinder output from all 47 species
    Sacu_v1.1_s0009.g004580 No alias not classified & original description: CDS=1-2331 0.04 OrthoFinder output from all 47 species
    Sacu_v1.1_s0017.g007167 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-3162 0.03 OrthoFinder output from all 47 species
    Sacu_v1.1_s0063.g015714 CRR22 not classified & original description: CDS=1-1887 0.05 OrthoFinder output from all 47 species
    Sacu_v1.1_s0084.g018249 No alias ssDNA-binding protein *(OSB) & original description: CDS=114-2492 0.04 OrthoFinder output from all 47 species
    Sacu_v1.1_s0243.g026662 No alias not classified & original description: CDS=264-2522 0.03 OrthoFinder output from all 47 species
    Sam_g19790 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Smo10002 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.02 OrthoFinder output from all 47 species
    Solyc11g017370.3.1 Solyc11g017370 RNA editing factor (AEF1) 0.03 OrthoFinder output from all 47 species
    Spa_g14281 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Spa_g18196 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Spa_g18963 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Spa_g26517 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Spa_g26814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Spa_g40518 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Spa_g54465 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
    Tin_g38826 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species

    Type GO Term Name Evidence Source

    No GO annotation available for this sequence
    Toggle parental
    Type GO Term Name Evidence Source
    MF GO:0003678 DNA helicase activity IEP HCCA
    MF GO:0003824 catalytic activity IEP HCCA
    MF GO:0004386 helicase activity IEP HCCA
    MF GO:0004518 nuclease activity IEP HCCA
    MF GO:0004527 exonuclease activity IEP HCCA
    MF GO:0005488 binding IEP HCCA
    BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
    BP GO:0006259 DNA metabolic process IEP HCCA
    BP GO:0006260 DNA replication IEP HCCA
    BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
    MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
    MF GO:0008237 metallopeptidase activity IEP HCCA
    MF GO:0008270 zinc ion binding IEP HCCA
    MF GO:0008408 3'-5' exonuclease activity IEP HCCA
    MF GO:0016787 hydrolase activity IEP HCCA
    BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
    MF GO:0043167 ion binding IEP HCCA
    MF GO:0043169 cation binding IEP HCCA
    BP GO:0046483 heterocycle metabolic process IEP HCCA
    MF GO:0046872 metal ion binding IEP HCCA
    MF GO:0046914 transition metal ion binding IEP HCCA
    MF GO:0051536 iron-sulfur cluster binding IEP HCCA
    MF GO:0051540 metal cluster binding IEP HCCA
    MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
    BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
    InterPro domains Description Start Stop
    IPR002885 Pentatricopeptide_repeat 255 304
    IPR002885 Pentatricopeptide_repeat 155 202
    IPR002885 Pentatricopeptide_repeat 561 591
    IPR002885 Pentatricopeptide_repeat 635 657
    IPR002885 Pentatricopeptide_repeat 461 489
    IPR002885 Pentatricopeptide_repeat 434 459
    IPR002885 Pentatricopeptide_repeat 533 555
    IPR002885 Pentatricopeptide_repeat 360 389
    No external refs found!