AT2G42740 (RPL16A)

Aliases : RPL16A

Description : ribosomal protein large subunit 16A

Gene families : OG_01_0001235 (Gene family) Phylogenetic Tree(s): OG0001235_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): AT2G42740
Cluster HCCA cluster: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020610.38 No alias protein.synthesis.ribosomal... 0.07 Gene family
Cre01.g027000 No alias protein.synthesis.ribosomal... 0.14 Gene family
GSVIVT01020743001 No alias protein.synthesis.ribosomal... 0.11 Gene family
GSVIVT01021244001 No alias protein.synthesis.ribosomal... 0.08 Gene family
LOC_Os01g10820 Os01g0205500 protein.synthesis.ribosomal... 0.07 Gene family
LOC_Os05g11710 Os05g0207300 protein.synthesis.ribosomal... 0.09 Gene family
LOC_Os06g35730 Os06g0550000 protein.synthesis.ribosomal... 0.05 Gene family
MA_74060g0010 No alias protein.synthesis.ribosomal... 0.06 Gene family
MA_86694g0010 No alias protein.synthesis.ribosomal... 0.06 Gene family
Smo444767 PACid_15419040 protein.synthesis.ribosomal... 0.07 Gene family
Solyc02g086240.3.1 Solyc02g086240.3 protein.synthesis.ribosomal... 0.12 Gene family
Solyc10g007970.2.1 Solyc10g007970.2 protein.synthesis.ribosomal... 0.13 Gene family
Solyc12g010930.2.1 Solyc12g010930.2 protein.synthesis.ribosomal... 0.12 Gene family
Zm00001d010016 GRMZM5G813584 protein.synthesis.ribosomal... 0.09 Gene family
Zm00001d016200 GRMZM2G014444 protein.synthesis.ribosomal... 0.16 Gene family
Zm00001d046317 GRMZM2G001816 protein.synthesis.ribosomal... 0.14 Gene family
Zm00001d053547 GRMZM2G018770 protein.synthesis.ribosomal... 0.11 Gene family

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation RCA
MF GO:0003735 structural constituent of ribosome ISS
CC GO:0005730 nucleolus IDA
CC GO:0005737 cytoplasm ISM
CC GO:0005773 vacuole IDA
CC GO:0005829 cytosol IDA
BP GO:0006412 translation ISS
BP GO:0006412 translation TAS
CC GO:0009506 plasmodesma IDA
CC GO:0009507 chloroplast IDA
CC GO:0022625 cytosolic large ribosomal subunit IDA
CC GO:0022625 cytosolic large ribosomal subunit ISS
CC GO:0022625 cytosolic large ribosomal subunit TAS
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR031310 Ribosomal_L5_N 9 62
IPR031309 Ribosomal_L5_C 66 164
No external refs found!