AT2G41850 (ADPG2, PGAZAT)


Aliases : ADPG2, PGAZAT

Description : polygalacturonase abscission zone A. thaliana


Gene families : OG_01_0000383 (Gene family) Phylogenetic Tree(s): OG0000383_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT2G41850
Cluster HCCA cluster: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01008062001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01032118001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
GSVIVT01033362001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
GSVIVT01033364001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.05 Gene family
Solyc01g087280.1.1 Solyc01g087280.1 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
Solyc04g015530.2.1 Solyc04g015530.2 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Zm00001d013032 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d034551 GRMZM2G092746,... 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IDA Arabidopsis.org
MF GO:0004650 polygalacturonase activity ISS Arabidopsis.org
CC GO:0005576 extracellular region ISM Arabidopsis.org
BP GO:0005975 carbohydrate metabolic process ISS Arabidopsis.org
BP GO:0009830 cell wall modification involved in abscission RCA Arabidopsis.org
BP GO:0009830 cell wall modification involved in abscission TAS Arabidopsis.org
BP GO:0009901 anther dehiscence IMP Arabidopsis.org
BP GO:0010047 fruit dehiscence IMP Arabidopsis.org
BP GO:0010227 floral organ abscission IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 95 420
No external refs found!