AT2G41840


Description : Ribosomal protein S5 family protein


Gene families : OG_01_0001422 (Gene family) Phylogenetic Tree(s): OG0001422_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT2G41840
Cluster HCCA cluster: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AT1G58380 XW6 Ribosomal protein S5 family protein 0.04 Gene family
Cpa|evm.model.tig00020961.135 No alias 29.2.1.2.1.2 protein.synthesis.ribosomal... 0.15 Gene family
Cre01.g039250 No alias 29.2.1.2.1.2 protein.synthesis.ribosomal... 0.21 Gene family
GSVIVT01033299001 No alias 29.2.1.2.1.2 protein.synthesis.ribosomal... 0.17 Gene family
LOC_Os03g59310 Os03g0807800 29.2.1.2.1.2 protein.synthesis.ribosomal... 0.3 Gene family
LOC_Os07g10660 Os07g0207400 29.2.1.2.1.2 protein.synthesis.ribosomal... 0.28 Gene family
MA_158470g0010 No alias 29.2.1.2.1.2 protein.synthesis.ribosomal... 0.06 Gene family
Smo67484 PACid_15411576 No description available 0.17 Gene family
Solyc04g063290.3.1 Solyc04g063290.3 29.2.1.2.1.2 protein.synthesis.ribosomal... 0.38 Gene family
Solyc04g074300.3.1 Solyc04g074300.3 29.2.1.2.1.2 protein.synthesis.ribosomal... 0.33 Gene family
Zm00001d013034 No alias 29.2.1.2.1.2 protein.synthesis.ribosomal... 0.37 Gene family
Zm00001d019147 GRMZM2G168149 29.2.1.2.1.2 protein.synthesis.ribosomal... 0.34 Gene family
Zm00001d034550 GRMZM2G092663 29.2.1.2.1.2 protein.synthesis.ribosomal... 0.33 Gene family

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation RCA Arabidopsis.org
MF GO:0003735 structural constituent of ribosome ISS Arabidopsis.org
CC GO:0005730 nucleolus IDA Arabidopsis.org
CC GO:0005829 cytosol IDA Arabidopsis.org
BP GO:0006412 translation ISS Arabidopsis.org
CC GO:0009506 plasmodesma IDA Arabidopsis.org
CC GO:0016020 membrane IDA Arabidopsis.org
CC GO:0022626 cytosolic ribosome IDA Arabidopsis.org
CC GO:0022627 cytosolic small ribosomal subunit IDA Arabidopsis.org
CC GO:0022627 cytosolic small ribosomal subunit ISS Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005324 Ribosomal_S5_C 179 245
IPR013810 Ribosomal_S5_N 96 160
No external refs found!