AT2G41080


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT2G41080
Cluster HCCA cluster: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
AT3G05240 MEF19 mitochondrial editing factor 19 0.04 Gene family
AT3G25060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT4G15720 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
GSVIVT01010031001 No alias No description available 0.02 Gene family
GSVIVT01022230001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
GSVIVT01024870001 No alias No description available 0.04 Gene family
GSVIVT01026025001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
GSVIVT01032994001 No alias No description available 0.03 Gene family
Solyc01g010510.3.1 Solyc01g010510.3 No description available 0.03 Gene family
Solyc01g080190.3.1 Solyc01g080190.3 No description available 0.02 Gene family
Solyc02g093380.1.1 Solyc02g093380.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
Solyc03g063160.1.1 Solyc03g063160.1 No description available 0.03 Gene family
Solyc03g093630.2.1 Solyc03g093630.2 No description available 0.02 Gene family
Solyc03g116000.1.1 Solyc03g116000.1 No description available 0.02 Gene family
Solyc04g063300.2.1 Solyc04g063300.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc04g076330.2.1 Solyc04g076330.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc06g082880.2.1 Solyc06g082880.2 No description available 0.02 Gene family
Solyc08g023640.1.1 Solyc08g023640.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc08g078570.2.1 Solyc08g078570.2 No description available 0.03 Gene family
Solyc09g065710.1.1 Solyc09g065710.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc11g008970.1.1 Solyc11g008970.1 No description available 0.03 Gene family
Solyc11g067210.1.1 Solyc11g067210.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Arabidopsis.org
CC GO:0005739 mitochondrion ISM Arabidopsis.org
BP GO:0008150 biological_process ND Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 156 202
IPR032867 DYW_dom 432 554
IPR002885 Pentatricopeptide_repeat 296 323
IPR002885 Pentatricopeptide_repeat 29 54
IPR002885 Pentatricopeptide_repeat 231 252
IPR002885 Pentatricopeptide_repeat 363 389
IPR002885 Pentatricopeptide_repeat 259 285
IPR002885 Pentatricopeptide_repeat 332 356
IPR002885 Pentatricopeptide_repeat 1 24
IPR002885 Pentatricopeptide_repeat 58 87
No external refs found!