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  5. Nbi_g18791

Nbi_g18791 (ISE2, PDE317, EMB25)


Aliases : ISE2, PDE317, EMB25

Description : group-II intron splicing RNA helicase *(ISE2) & original description: none


Gene families : OG0004771 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004771_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g18791

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00090p00178540 ISE2, PDE317,... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AT1G70070 ISE2, PDE317, EMB25 DEAD/DEAH box helicase, putative 0.03 OrthoFinder output from all 47 species
Aev_g25423 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.04 OrthoFinder output from all 47 species
Aop_g13240 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.07 OrthoFinder output from all 47 species
Ceric.18G021200.1 ISE2, PDE317,... group-II intron splicing RNA helicase *(ISE2) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001239.1 ISE2, PDE317, EMB25 DExH-box ATP-dependent RNA helicase DExH15 chloroplastic... 0.01 OrthoFinder output from all 47 species
Dcu_g20011 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01020137001 ISE2, PDE317, EMB25 RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
Gb_35993 ISE2, PDE317, EMB25 RNA helicase (ISE2) 0.03 OrthoFinder output from all 47 species
LOC_Os02g50560.1 ISE2, PDE317,... RNA helicase (ISE2) 0.04 OrthoFinder output from all 47 species
Lfl_g12767 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.04 OrthoFinder output from all 47 species
Mp4g01470.1 ISE2, PDE317, EMB25 RNA helicase (ISE2) 0.06 OrthoFinder output from all 47 species
Ore_g19053 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Pir_g14171 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.07 OrthoFinder output from all 47 species
Ppi_g08266 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.06 OrthoFinder output from all 47 species
Tin_g12272 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e015769_P001 ISE2, PDE317,... RNA helicase (ISE2) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR012961 Ski2/MTR4_C 1051 1218
IPR011545 DEAD/DEAH_box_helicase_dom 209 361
No external refs found!