AT2G40310


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0000381 (Gene family) Phylogenetic Tree(s): OG0000381_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT2G40310
Cluster HCCA cluster: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AT3G07820 No alias Pectin lyase-like superfamily protein 0.03 Gene family
AT5G48140 No alias Pectin lyase-like superfamily protein 0.03 Gene family
LOC_Os02g10300 Os02g0196700 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
LOC_Os06g40880 Os06g0611400 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc02g069480.2.1 Solyc02g069480.2 No description available 0.02 Gene family
Solyc10g047570.2.1 Solyc10g047570.2 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d015821 GRMZM2G151755 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d036816 GRMZM2G160526 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d036818 GRMZM2G153666 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d036823 GRMZM2G320175,... 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Zm00001d053662 GRMZM2G030265 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISS Arabidopsis.org
CC GO:0005576 extracellular region ISM Arabidopsis.org
BP GO:0005975 carbohydrate metabolic process ISS Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 63 391
No external refs found!