AT2G39460 (RPL23A, RPL23AA, ATRPL23A)

Aliases : RPL23A, RPL23AA, ATRPL23A

Description : ribosomal protein L23AA

Gene families : OG_01_0001231 (Gene family) Phylogenetic Tree(s): OG0001231_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): AT2G39460
Cluster HCCA cluster: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000037.39 No alias protein.synthesis.ribosomal... 0.3 Gene family
Cre06.g282500 No alias protein.synthesis.ribosomal... 0.38 Gene family
GSVIVT01025041001 No alias protein.synthesis.ribosomal... 0.06 Gene family
GSVIVT01025606001 No alias protein.synthesis.ribosomal... 0.12 Gene family
LOC_Os01g24690 Os01g0348700 protein.synthesis.ribosomal... 0.05 Gene family
LOC_Os04g42270 Os04g0501000 protein.synthesis.ribosomal... 0.21 Gene family
MA_10430928g0010 No alias protein.synthesis.ribosomal... 0.15 Gene family
MA_10436962g0020 No alias protein.synthesis.ribosomal... 0.14 Gene family
Smo271663 PACid_15402421 No description available 0.21 Gene family
Solyc09g005720.3.1 Solyc09g005720.3 protein.synthesis.ribosomal... 0.19 Gene family
Solyc10g084615.1.1 Solyc10g084615.1 protein.synthesis.ribosomal... 0.08 Gene family
Solyc10g086330.2.1 Solyc10g086330.2 protein.synthesis.ribosomal... 0.14 Gene family
Zm00001d003127 GRMZM2G083253 protein.synthesis.ribosomal... 0.33 Gene family
Zm00001d024655 GRMZM2G172153,... protein.synthesis.ribosomal... 0.03 Gene family
Zm00001d025784 GRMZM2G124411 protein.synthesis.ribosomal... 0.2 Gene family
Zm00001d037489 GRMZM2G166659 protein.synthesis.ribosomal... 0.03 Gene family

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation RCA
MF GO:0003723 RNA binding ISS
MF GO:0003735 structural constituent of ribosome ISS
CC GO:0005618 cell wall IDA
CC GO:0005622 intracellular ISS
CC GO:0005730 nucleolus IDA
CC GO:0005737 cytoplasm ISM
CC GO:0005829 cytosol IDA
BP GO:0006412 translation ISS
BP GO:0006412 translation TAS
BP GO:0006979 response to oxidative stress IEP
BP GO:0009409 response to cold IEP
CC GO:0009506 plasmodesma IDA
BP GO:0009644 response to high light intensity IEP
CC GO:0015934 large ribosomal subunit TAS
CC GO:0022625 cytosolic large ribosomal subunit IDA
CC GO:0022625 cytosolic large ribosomal subunit ISS
CC GO:0022626 cytosolic ribosome IDA
BP GO:0042254 ribosome biogenesis ISS
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005633 Ribosomal_L23/L25_N 15 63
IPR013025 Ribosomal_L25/23 74 136
No external refs found!