AT2G39260


Description : binding;RNA binding


Gene families : OG_01_0002987 (Gene family) Phylogenetic Tree(s): OG0002987_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT2G39260
Cluster HCCA cluster: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022080.18 No alias 29.2.99 protein.synthesis.misc bindingRNA binding 0.02 Gene family
Cre17.g729250 No alias 29.2.99 protein.synthesis.misc bindingRNA binding 0.02 Gene family
GSVIVT01016353001 No alias 29.2.99 protein.synthesis.misc bindingRNA binding 0.07 Gene family
LOC_Os02g42040 Os02g0631500,... 29.2.99 protein.synthesis.misc bindingRNA binding 0.05 Gene family
MA_10437229g0010 No alias 29.2.99 protein.synthesis.misc bindingRNA binding 0.02 Gene family
Solyc04g049770.3.1 Solyc04g049770.3 29.2.99 protein.synthesis.misc bindingRNA binding 0.09 Gene family
Zm00001d017303 GRMZM2G042173 29.2.99 protein.synthesis.misc bindingRNA binding 0.03 Gene family
Zm00001d051183 GRMZM2G418604 29.2.99 protein.synthesis.misc bindingRNA binding 0.04 Gene family

Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle RCA Arabidopsis.org
BP GO:0000956 nuclear-transcribed mRNA catabolic process RCA Arabidopsis.org
MF GO:0003723 RNA binding ISS Arabidopsis.org
CC GO:0005737 cytoplasm ISM Arabidopsis.org
BP GO:0006396 RNA processing RCA Arabidopsis.org
BP GO:0006412 translation ISS Arabidopsis.org
BP GO:0009630 gravitropism RCA Arabidopsis.org
BP GO:0019344 cysteine biosynthetic process RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007193 Upf2/Nmd2_C 986 1122
IPR003890 MIF4G-like_typ-3 60 264
IPR003890 MIF4G-like_typ-3 469 655
IPR003890 MIF4G-like_typ-3 672 871
No external refs found!