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  5. Nbi_g18514

Nbi_g18514 (GAMMA-H2AX, H2AXB,...)


Aliases : GAMMA-H2AX, H2AXB, HTA3, G-H2AX

Description : histone *(H2A) & original description: none


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g18514

Target Alias Description ECC score Gene Family Method Actions
Aev_g04264 HTA13 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0102.g044568 HTA6 histone *(H2A) & original description: CDS=1-438 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001085.4 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.01 OrthoFinder output from all 47 species
Ehy_g28664 HTA6 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g21938 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Mp4g21750.1 GAMMA-H2AX,... histone (H2A) 0.02 OrthoFinder output from all 47 species
Nbi_g09279 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g42735 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08324 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g05881 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c10_13610V3.1 GAMMA-H2AX,... gamma histone variant H2AX 0.01 OrthoFinder output from all 47 species
Spa_g02722 HTA13 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005512_P001 GAMMA-H2AX,... histone (H2A) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006457 protein folding IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 55 153
IPR032454 Histone_H2A_C 156 189
No external refs found!