AT2G36990 (SIGF, SIG6, SOLDAT8, ATSIG6)


Aliases : SIGF, SIG6, SOLDAT8, ATSIG6

Description : RNApolymerase sigma-subunit F


Gene families : OG_01_0001192 (Gene family) Phylogenetic Tree(s): OG0001192_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT2G36990
Cluster HCCA cluster: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000842.1 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
Cre03.g194950 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
GSVIVT01019326001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.13 Gene family
GSVIVT01025717001 No alias No description available 0.1 Gene family
GSVIVT01032193001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.06 Gene family
GSVIVT01035330001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.05 Gene family
LOC_Os03g16430 Os03g0271100 27.3.85 RNA.regulation of transcription.sigma like plant... 0.03 Gene family
LOC_Os08g14450 Os08g0242800,... No description available 0.04 Gene family
LOC_Os11g26160 Os11g0448400 27.3.85 RNA.regulation of transcription.sigma like plant... 0.15 Gene family
MA_10429585g0010 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.06 Gene family
Smo117159 PACid_15403291 27.3.85 RNA.regulation of transcription.sigma like plant... 0.08 Gene family
Solyc01g081490.3.1 Solyc01g081490.3 27.3.85 RNA.regulation of transcription.sigma like plant... 0.19 Gene family
Solyc01g087690.2.1 Solyc01g087690.2 27.3.85 RNA.regulation of transcription.sigma like plant... 0.06 Gene family
Solyc08g065970.3.1 Solyc08g065970.3 27.3.85 RNA.regulation of transcription.sigma like plant... 0.08 Gene family
Solyc09g008040.3.1 Solyc09g008040.3 No description available 0.09 Gene family
Zm00001d012810 GRMZM2G144196 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
Zm00001d028585 GRMZM2G003182,... 27.3.85 RNA.regulation of transcription.sigma like plant... 0.03 Gene family
Zm00001d049160 GRMZM2G143392 27.3.85 RNA.regulation of transcription.sigma like plant... 0.17 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Arabidopsis.org
MF GO:0003700 DNA-binding transcription factor activity ISS Arabidopsis.org
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity ISS Arabidopsis.org
MF GO:0005515 protein binding IPI Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006352 DNA-templated transcription, initiation TAS Arabidopsis.org
BP GO:0006355 regulation of transcription, DNA-templated ISS Arabidopsis.org
CC GO:0009507 chloroplast IDA Arabidopsis.org
CC GO:0009536 plastid IDA Arabidopsis.org
BP GO:0009902 chloroplast relocation RCA Arabidopsis.org
BP GO:0009965 leaf morphogenesis RCA Arabidopsis.org
BP GO:0010027 thylakoid membrane organization RCA Arabidopsis.org
BP GO:0016117 carotenoid biosynthetic process RCA Arabidopsis.org
MF GO:0016987 sigma factor activity IDA Arabidopsis.org
MF GO:0016987 sigma factor activity ISS Arabidopsis.org
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway RCA Arabidopsis.org
BP GO:0030154 cell differentiation RCA Arabidopsis.org
BP GO:0034660 ncRNA metabolic process RCA Arabidopsis.org
BP GO:0045893 positive regulation of transcription, DNA-templated IMP Arabidopsis.org
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Arabidopsis.org
BP GO:0071482 cellular response to light stimulus IMP Arabidopsis.org
BP GO:0071483 cellular response to blue light IEP Arabidopsis.org
BP GO:0090351 seedling development IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 311 380
IPR007630 RNA_pol_sigma70_r4 479 532
IPR007624 RNA_pol_sigma70_r3 391 465
No external refs found!