AT1G13040


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_01_0010380 (Archaeplastida) Phylogenetic Tree(s): OG_01_0010380_tree ,
OG_02_0000728 (LandPlants) Phylogenetic Tree(s): OG_02_0000728_tree ,
OG_03_0007555 (SeedPlants) Phylogenetic Tree(s): OG_03_0007555_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G13040
Cluster HCCA: Cluster_208

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01000559001 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.02 Archaeplastida
Pp3c6_3910V3.1 No alias ABA Overly-Sensitive 5 0.02 Archaeplastida
Solyc06g008190.1.1 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.03 Archaeplastida
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.05 LandPlants
AMTR_s00144p00054940 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g40240,... 0.04 LandPlants
GSVIVT01000559001 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.02 LandPlants
Gb_03488 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
Gb_33357 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.02 LandPlants
Gb_33603 No alias Pentatricopeptide repeat-containing protein At1g12775,... 0.01 LandPlants
LOC_Os07g48850.2 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.04 LandPlants
MA_18233g0020 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.02 LandPlants
MA_20659g0010 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.01 LandPlants
MA_863891g0010 No alias no hits & (original description: none) 0.02 LandPlants
Mp4g20290.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.02 LandPlants
Solyc06g008190.1.1 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.03 LandPlants
Zm00001e035905_P001 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.04 LandPlants
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.04 SeedPlants
GSVIVT01000559001 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.02 SeedPlants
LOC_Os07g48850.2 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.05 SeedPlants
Solyc06g008190.1.1 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.03 SeedPlants
Zm00001e035905_P001 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.04 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
CC GO:0005774 vacuolar membrane IDA Interproscan
BP GO:0008150 biological_process ND Interproscan
BP GO:0009688 abscisic acid biosynthetic process RCA Interproscan
BP GO:0016114 terpenoid biosynthetic process RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 80 110
IPR002885 Pentatricopeptide_repeat 467 496
IPR002885 Pentatricopeptide_repeat 116 144
IPR002885 Pentatricopeptide_repeat 12 37
IPR002885 Pentatricopeptide_repeat 219 263
IPR002885 Pentatricopeptide_repeat 393 442
IPR002885 Pentatricopeptide_repeat 324 370
IPR002885 Pentatricopeptide_repeat 147 196
No external refs found!