Nbi_g17898

Description : plastidial RNA pseudouridine synthase *(PUS6) & original description: none

Gene families : OG0004900 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004900_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g17898

Target	Alias	Description	ECC score	Gene Family Method
AT4G21770	No alias	Pseudouridine synthase family protein	0.03	OrthoFinder output from all 47 species
Adi_g023438	No alias	plastidial RNA pseudouridine synthase *(PUS6) & original...	0.03	OrthoFinder output from all 47 species
Aob_g04323	No alias	plastidial RNA pseudouridine synthase *(PUS6) & original...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021244.25	No alias	RNA pseudouridine synthase 6, chloroplastic...	0.01	OrthoFinder output from all 47 species
Mp7g08400.1	No alias	RNA pseudouridine synthase 6, chloroplastic...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR006145	PsdUridine_synth_RsuA/RluA	223	391

External Links

No external refs found!