AT2G30800 (HVT1, ATVT-1)


Aliases : HVT1, ATVT-1

Description : helicase in vascular tissue and tapetum


Gene families : OG_01_0007413 (Gene family) Phylogenetic Tree(s): OG0007413_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT2G30800
Cluster HCCA cluster: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g56190 Os01g0767700 28.1 DNA.synthesis/chromatin structure Has RNA or DNA... 0.05 Gene family
MA_10434659g0010 No alias 28.1 DNA.synthesis/chromatin structure Has RNA or DNA... 0.05 Gene family
Smo50132 PACid_15403700 28.1 DNA.synthesis/chromatin structure Has RNA or DNA... 0.02 Gene family
Zm00001d012661 GRMZM2G037280,... 28.1 DNA.synthesis/chromatin structure Has RNA or DNA... 0.05 Gene family

Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization RCA Arabidopsis.org
BP GO:0000911 cytokinesis by cell plate formation RCA Arabidopsis.org
MF GO:0003676 nucleic acid binding ISS Arabidopsis.org
MF GO:0004386 helicase activity ISS Arabidopsis.org
MF GO:0005524 ATP binding ISS Arabidopsis.org
CC GO:0005634 nucleus ISS Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001650 Helicase_C 543 670
IPR011545 DEAD/DEAH_box_helicase_dom 196 349
IPR001374 R3H_dom 27 80
IPR007502 Helicase-assoc_dom 735 826
IPR011709 DUF1605 895 982
No external refs found!