AT2G30620


Description : winged-helix DNA-binding transcription factor family protein


Gene families : OG_01_0000278 (Gene family) Phylogenetic Tree(s): OG0000278_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT2G30620
Cluster HCCA cluster: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01018114001 No alias 28.1.3.1 DNA.synthesis/chromatin structure.histone.H1... 0.02 Gene family
GSVIVT01028074001 No alias 28.1.3.1 DNA.synthesis/chromatin structure.histone.H1... 0.05 Gene family
MA_102457g0010 No alias 28.1.3.1 DNA.synthesis/chromatin structure.histone.H1... 0.01 Gene family
MA_10436125g0020 No alias No description available 0.02 Gene family
MA_877599g0010 No alias 28.1.3.1 DNA.synthesis/chromatin structure.histone.H1... 0.01 Gene family
Solyc02g084240.3.1 Solyc02g084240.3 28.1.3.1 DNA.synthesis/chromatin structure.histone.H1... 0.03 Gene family
Zm00001d002601 GRMZM2G080274 28.1.3.1 DNA.synthesis/chromatin structure.histone.H1... 0.11 Gene family
Zm00001d013066 GRMZM2G121221 28.1.3.1 DNA.synthesis/chromatin structure.histone.H1... 0.02 Gene family
Zm00001d013067 GRMZM2G003002 28.1.3.1 DNA.synthesis/chromatin structure.histone.H1... 0.08 Gene family
Zm00001d034479 GRMZM2G164020 28.1.3.1 DNA.synthesis/chromatin structure.histone.H1... 0.03 Gene family

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome ISS Arabidopsis.org
MF GO:0003677 DNA binding ISS Arabidopsis.org
CC GO:0005634 nucleus ISS Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
CC GO:0005730 nucleolus IDA Arabidopsis.org
CC GO:0005739 mitochondrion IDA Arabidopsis.org
BP GO:0006334 nucleosome assembly ISS Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 62 127
No external refs found!