AT2G24790 (COL3, ATCOL3)

Aliases : COL3, ATCOL3

Description : CONSTANS-like 3

Gene families : OG_01_0000267 (Gene family) Phylogenetic Tree(s): OG0000267_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): AT2G24790
Cluster	HCCA cluster: Cluster_162

Target	Alias	Description	ECC score	Gene Family Method	Actions
GSVIVT01036037001	No alias	27.3.7 RNA.regulation of transcription.C2C2(Zn) CO-like,...	0.02	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Arabidopsis.org
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Arabidopsis.org
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Arabidopsis.org
CC	GO:0005634	nucleus	ISM	Arabidopsis.org
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Arabidopsis.org
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009637	response to blue light	RCA	Arabidopsis.org
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009642	response to light intensity	None	Extended
BP	GO:0009644	response to high light intensity	RCA	Arabidopsis.org
BP	GO:0009743	response to carbohydrate	None	Extended
BP	GO:0009744	response to sucrose	RCA	Arabidopsis.org
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010017	red or far-red light signaling pathway	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010099	regulation of photomorphogenesis	IMP	Arabidopsis.org
BP	GO:0010114	response to red light	RCA	Arabidopsis.org
BP	GO:0010155	regulation of proton transport	RCA	Arabidopsis.org
BP	GO:0010161	red light signaling pathway	IMP	Arabidopsis.org
BP	GO:0010218	response to far red light	RCA	Arabidopsis.org
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0032880	regulation of protein localization	RCA	Arabidopsis.org
BP	GO:0034285	response to disaccharide	None	Extended
BP	GO:0034762	regulation of transmembrane transport	None	Extended
BP	GO:0034765	regulation of ion transmembrane transport	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043269	regulation of ion transport	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051049	regulation of transport	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071478	cellular response to radiation	None	Extended
BP	GO:0071482	cellular response to light stimulus	None	Extended
BP	GO:0071489	cellular response to red or far red light	None	Extended
BP	GO:0071491	cellular response to red light	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1904062	regulation of cation transmembrane transport	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000030	regulation of response to red or far red light	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000315	Znf_B-box	48	93
IPR000315	Znf_B-box	5	47
IPR010402	CCT_domain	229	271

External Links

No external refs found!

AT2G24790 (COL3, ATCOL3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation