Nbi_g17034

Description : component *(eL21) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001239 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001239_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g17034

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00252940	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
AMTR_s00024p00178920	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
AT1G09590	No alias	Translation protein SH3-like family protein	0.06	OrthoFinder output from all 47 species
AT1G09690	No alias	Translation protein SH3-like family protein	0.06	OrthoFinder output from all 47 species
AT1G57660	No alias	Translation protein SH3-like family protein	0.05	OrthoFinder output from all 47 species
Adi_g043900	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ala_g03009	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g05077	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g09546	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Azfi_s0509.g074695	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ceric.07G094100.1	Ceric.07G094100	component *(eL21) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.10G032200.1	Ceric.10G032200	component *(eL21) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Ceric.24G006900.1	Ceric.24G006900	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000640.5	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
Cre06.g278135	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Dac_g13798	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Dcu_g14505	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01001130001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01033444001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
GSVIVT01033455001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
Gb_09077	No alias	component RPL21 of LSU proteome component	0.06	OrthoFinder output from all 47 species
LOC_Os03g04750.1	LOC_Os03g04750	component RPL21 of LSU proteome component	0.07	OrthoFinder output from all 47 species
LOC_Os10g32820.1	LOC_Os10g32820	component RPL21 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Mp6g01390.1	No alias	component RPL21 of LSU proteome component	0.1	OrthoFinder output from all 47 species
Msp_g34423	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pp3c12_9320V3.1	Pp3c12_9320	Translation protein SH3-like family protein	0.05	OrthoFinder output from all 47 species
Pp3c13_2360V3.1	Pp3c13_2360	Translation protein SH3-like family protein	0.04	OrthoFinder output from all 47 species
Pp3c3_5550V3.1	Pp3c3_5550	Translation protein SH3-like family protein	0.04	OrthoFinder output from all 47 species
Pp3c4_21520V3.1	Pp3c4_21520	Translation protein SH3-like family protein	0.05	OrthoFinder output from all 47 species
Ppi_g21572	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Sam_g15602	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Solyc10g078960.2.1	Solyc10g078960	component RPL21 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Solyc10g080590.2.1	Solyc10g080590	component RPL21 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Spa_g21282	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Spa_g21283	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Spa_g29345	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Spa_g52174	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Tin_g29829	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e000341_P001	Zm00001e000341	component RPL21 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Zm00001e012727_P001	Zm00001e012727	component RPL21 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Zm00001e038963_P001	Zm00001e038963	component RPL21 of LSU proteome component	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0000295	adenine nucleotide transmembrane transporter activity	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005346	purine ribonucleotide transmembrane transporter activity	IEP	HCCA
MF	GO:0005347	ATP transmembrane transporter activity	IEP	HCCA
MF	GO:0005471	ATP:ADP antiporter activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006862	nucleotide transport	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	HCCA
MF	GO:0015215	nucleotide transmembrane transporter activity	IEP	HCCA
MF	GO:0015216	purine nucleotide transmembrane transporter activity	IEP	HCCA
MF	GO:0015217	ADP transmembrane transporter activity	IEP	HCCA
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015297	antiporter activity	IEP	HCCA
MF	GO:0015605	organophosphate ester transmembrane transporter activity	IEP	HCCA
BP	GO:0015748	organophosphate ester transport	IEP	HCCA
BP	GO:0015931	nucleobase-containing compound transport	IEP	HCCA
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031968	organelle outer membrane	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001147	Ribosomal_L21e	1	101

External Links

No external refs found!

Nbi_g17034

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation