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  5. Nbi_g16836

Nbi_g16836


Description : RNA helicase *(Brr2) & original description: none


Gene families : OG0001175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001175_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g16836
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00146400 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH14... 0.03 OrthoFinder output from all 47 species
AT5G61140 No alias U5 small nuclear ribonucleoprotein helicase 0.03 OrthoFinder output from all 47 species
Aev_g29910 No alias RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09018 No alias RNA helicase *(Brr2) & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.1Z263400.1 Ceric.1Z263400 RNA helicase *(Brr2) & original description:... 0.03 OrthoFinder output from all 47 species
Ehy_g04070 No alias RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007875001 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.07 OrthoFinder output from all 47 species
Gb_27895 emb1507 RNA helicase (Brr2) 0.03 OrthoFinder output from all 47 species
Len_g08641 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10429486g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.04 OrthoFinder output from all 47 species
MA_10434882g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 OrthoFinder output from all 47 species
MA_10434991g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.03 OrthoFinder output from all 47 species
MA_8113344g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.02 OrthoFinder output from all 47 species
MA_81219g0020 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.03 OrthoFinder output from all 47 species
MA_81219g0030 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.03 OrthoFinder output from all 47 species
MA_823844g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.03 OrthoFinder output from all 47 species
MA_930633g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.02 OrthoFinder output from all 47 species
Sam_g36113 No alias RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc06g069480.3.1 Solyc06g069480 DExH-box ATP-dependent RNA helicase DExH14... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016787 hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR004179 Sec63-dom 1795 2110
IPR004179 Sec63-dom 963 1268
IPR001650 Helicase_C 1587 1675
IPR001650 Helicase_C 693 839
IPR011545 DEAD/DEAH_box_helicase_dom 1312 1477
IPR011545 DEAD/DEAH_box_helicase_dom 464 638
No external refs found!