AT2G20890 (PSB29, THF1)

Aliases : PSB29, THF1

Description : photosystem II reaction center PSB29 protein

Gene families : OG_01_0007600 (Gene family) Phylogenetic Tree(s): OG0007600_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): AT2G20890
Cluster HCCA cluster: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
Cre13.g562850 No alias 29.3 protein.targeting Chloroplast-localized Thylakoid... 0.04 Gene family
GSVIVT01029990001 No alias No description available 0.1 Gene family
LOC_Os07g37250 Os07g0558500 No description available 0.07 Gene family
MA_10426766g0010 No alias No description available 0.04 Gene family
Solyc07g054820.3.1 Solyc07g054820.3 No description available 0.17 Gene family
Zm00001d021764 GRMZM2G033493 No description available 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND
MF GO:0005515 protein binding IPI
BP GO:0006364 rRNA processing RCA
BP GO:0006417 regulation of translation RCA
BP GO:0006655 phosphatidylglycerol biosynthetic process RCA
BP GO:0007186 G-protein coupled receptor signaling pathway IPI
CC GO:0009507 chloroplast IDA
CC GO:0009507 chloroplast ISM
CC GO:0009527 plastid outer membrane IDA
CC GO:0009528 plastid inner membrane IDA
CC GO:0009532 plastid stroma IDA
CC GO:0009534 chloroplast thylakoid IDA
CC GO:0009534 chloroplast thylakoid ISS
CC GO:0009535 chloroplast thylakoid membrane IDA
CC GO:0009570 chloroplast stroma IDA
BP GO:0009657 plastid organization RCA
BP GO:0009773 photosynthetic electron transport in photosystem I RCA
BP GO:0009902 chloroplast relocation RCA
CC GO:0009941 chloroplast envelope IDA
BP GO:0010027 thylakoid membrane organization IMP
BP GO:0010027 thylakoid membrane organization RCA
BP GO:0010182 sugar mediated signaling pathway IMP
BP GO:0010207 photosystem II assembly RCA
BP GO:0010207 photosystem II assembly TAS
CC GO:0010319 stromule IDA
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway RCA
BP GO:0034660 ncRNA metabolic process RCA
BP GO:0035304 regulation of protein dephosphorylation RCA
BP GO:0042742 defense response to bacterium RCA
BP GO:0042793 plastid transcription RCA
BP GO:0045037 protein import into chloroplast stroma IDA
BP GO:0045038 protein import into chloroplast thylakoid membrane IDA
BP GO:0045893 positive regulation of transcription, DNA-templated RCA
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR017499 Thf1 67 271
No external refs found!