Nbi_g16224


Description : not classified & original description: none


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g16224

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00185200 ATL6,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00152p00054630 RHA2A,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT1G15100 RHA2A RING-H2 finger A2A 0.05 OrthoFinder output from all 47 species
AT2G17450 RHA3A RING-H2 finger A3A 0.03 OrthoFinder output from all 47 species
AT2G27940 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G43430 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G10160 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Als_g04740 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Als_g10161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05022 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene54627.t1 Aspi01Gene54627 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.1 OrthoFinder output from all 47 species
Aspi01Gene65265.t1 ATL2, TL2,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Azfi_s0099.g044133 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.07G057700.1 Ceric.07G057700 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.20G013600.1 ATL5, Ceric.20G013600 not classified & original description: pacid=50566012... 0.03 OrthoFinder output from all 47 species
Ceric.21G071800.1 Ceric.21G071800 not classified & original description: pacid=50603516... 0.23 OrthoFinder output from all 47 species
Ceric.22G069000.1 Ceric.22G069000 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.29G079800.1 Ceric.29G079800 not classified & original description: pacid=50625628... 0.03 OrthoFinder output from all 47 species
Ceric.34G056700.1 Ceric.34G056700 not classified & original description: pacid=50623881... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000903.17 AtAIRP1, AIRP1 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Dac_g14301 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dcu_g04499 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.1 OrthoFinder output from all 47 species
GSVIVT01000538001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01008756001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Gb_03946 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_04642 ATL2, TL2 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Gb_14312 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os01g55110.1 LOC_Os01g55110 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os02g45390.1 LOC_Os02g45390 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os02g54830.1 LOC_Os02g54830 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os04g49160.1 LOC_Os04g49160 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os06g07100.2 LOC_Os06g07100 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os08g37760.1 ATL6, LOC_Os08g37760 RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
LOC_Os08g38460.1 XERICO, LOC_Os08g38460 ubiquitin protein ligase (XERICO) 0.03 OrthoFinder output from all 47 species
LOC_Os08g44950.1 LOC_Os08g44950 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Len_g00972 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.09 OrthoFinder output from all 47 species
Lfl_g26927 BRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g39367 RHA3B not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10429091g0010 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_111727g0010 No alias RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
MA_114175g0010 ATL2, TL2 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_3417591g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_6475030g0010 ATL3 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_786911g0010 ATL2, TL2 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_904294g0010 ATL3 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Mp1g27170.1 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Msp_g12500 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Msp_g16085 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Msp_g20510 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ore_g10560 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20730 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ore_g30955 XERICO not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41609 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g11149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g26309 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g55439 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g24030 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Ppi_g33048 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61044 RHA3A RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.07 OrthoFinder output from all 47 species
Sam_g25475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26212 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g114190.1.1 Solyc03g114190 RING-H2 finger protein ATL56 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc06g061250.3.1 Solyc06g061250 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc11g010330.3.1 Solyc11g010330 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc12g087860.3.1 ATL6, Solyc12g087860 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Spa_g07577 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Spa_g17343 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Spa_g39301 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Spa_g56586 No alias not classified & original description: none 0.24 OrthoFinder output from all 47 species
Tin_g09732 No alias not classified & original description: none 0.13 OrthoFinder output from all 47 species
Zm00001e000398_P001 Zm00001e000398 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e007103_P001 Zm00001e007103 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Zm00001e015445_P001 BRH1, Zm00001e015445 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e015495_P001 Zm00001e015495 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e015905_P001 ATL31, CNI1,... RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e023515_P001 Zm00001e023515 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e023585_P001 Zm00001e023585 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e024866_P001 ATL43, Zm00001e024866 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e031874_P001 Zm00001e031874 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e035560_P001 ATL3, Zm00001e035560 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e039357_P001 Zm00001e039357 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001841 Znf_RING 176 219
No external refs found!