AT2G16485


Description : nucleic acid binding;zinc ion binding;DNA binding


Gene families : OG_01_0002662 (Gene family) Phylogenetic Tree(s): OG0002662_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT2G16485
Cluster HCCA cluster: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01024181001 No alias 35.2 not assigned.unknown nucleic acid bindingzinc ion... 0.04 Gene family
LOC_Os09g36090 Os09g0530500,... 35.2 not assigned.unknown nucleic acid bindingzinc ion... 0.05 Gene family
LOC_Os10g36810 Os10g0511800,... 35.2 not assigned.unknown nucleic acid bindingzinc ion... 0.02 Gene family
Solyc02g084520.3.1 Solyc02g084520.3 27.3.63 RNA.regulation of transcription.PHD finger... 0.02 Gene family
Solyc11g062220.2.1 Solyc11g062220.2 35.2 not assigned.unknown nucleic acid bindingzinc ion... 0.09 Gene family
Zm00001d012755 GRMZM2G350447 35.2 not assigned.unknown nucleic acid bindingzinc ion... 0.07 Gene family
Zm00001d032471 No alias 35.2 not assigned.unknown nucleic acid bindingzinc ion... 0.04 Gene family
Zm00001d043434 GRMZM2G443814 35.2 not assigned.unknown nucleic acid bindingzinc ion... 0.07 Gene family

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Arabidopsis.org
CC GO:0005829 cytosol IDA Arabidopsis.org
BP GO:0031048 chromatin silencing by small RNA IMP Arabidopsis.org
MF GO:0042393 histone binding IDA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR004343 Plus-3_dom 949 1051
IPR003169 GYF 1310 1350
IPR003121 SWIB_MDM2_domain 825 882
IPR000571 Znf_CCCH 1749 1772
No external refs found!