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  5. Nbi_g15667

Nbi_g15667 (ATARFA1F, ARFA1F)


Aliases : ATARFA1F, ARFA1F

Description : ARF-GTPase *(ARF1) & original description: none


Gene families : OG0000026 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0000026_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g15667
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Als_g59888 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.01 OrthoFinder output from all 39 species
Aob_g30002 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.01 OrthoFinder output from all 39 species
Aspi01Gene41622.t1 ATARFA1F,... ARF-GTPase *(ARF1) & original description: none 0.01 OrthoFinder output from all 39 species
Dde_g09806 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.01 OrthoFinder output from all 39 species
Dde_g38212 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
LOC_Os07g12200.1 ARF1A1C, LOC_Os07g12200 ARF-GTPase 0.01 OrthoFinder output from all 39 species
Lfl_g22222 ATARF1, ARF1,... ARF-GTPase *(ARF1) & original description: none 0.01 OrthoFinder output from all 39 species
Lfl_g31478 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.01 OrthoFinder output from all 39 species
Pir_g06024 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 39 species
Spa_g05142 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 39 species
Spa_g29324 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 39 species
Tin_g05371 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.01 OrthoFinder output from all 39 species
Tin_g46062 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
Zm00001e009391_P001 ARF1A1C, Zm00001e009391 ARF-GTPase 0.01 OrthoFinder output from all 39 species
Zm00001e031984_P002 ATARFA1B,... ARF-GTPase 0.01 OrthoFinder output from all 39 species
Zm00001e033127_P003 ARF1A1C, Zm00001e033127 ARF-GTPase 0.01 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000491 small nucleolar ribonucleoprotein complex assembly IEP HCCA
BP GO:0000492 box C/D snoRNP assembly IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR006689 Small_GTPase_ARF/SAR 5 176
No external refs found!