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  5. Nbi_g15293

Nbi_g15293 (SMG7)


Aliases : SMG7

Description : Nonsense-Mediated mRNA Decay protein *(SMG7) & original description: none


Gene families : OG0001313 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001313_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g15293

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00170580 SMG7,... RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.02 OrthoFinder output from all 47 species
Adi_g013417 SMG7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20910 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005544 calcium-dependent phospholipid binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
InterPro domains Description Start Stop
IPR018834 DNA/RNA-bd_Est1-type 213 546
IPR019458 Est1-like_N 74 200
No external refs found!