AT1G77180 (SKIP)


Aliases : SKIP

Description : chromatin protein family


Gene families : OG_01_0005926 (Gene family) Phylogenetic Tree(s): OG0005926_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT1G77180
Cluster HCCA cluster: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000944.22 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.03 Gene family
Cre01.g051100 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.01 Gene family
LOC_Os02g52250 Os02g0759800 28.1 DNA.synthesis/chromatin structure Encodes a... 0.02 Gene family
Solyc12g008370.2.1 Solyc12g008370.2 28.1 DNA.synthesis/chromatin structure Encodes a... 0.04 Gene family

Type GO Term Name Evidence Source
BP GO:0000956 nuclear-transcribed mRNA catabolic process RCA Arabidopsis.org
MF GO:0005515 protein binding IPI Arabidopsis.org
CC GO:0005634 nucleus IDA Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
CC GO:0005730 nucleolus IDA Arabidopsis.org
BP GO:0006499 N-terminal protein myristoylation RCA Arabidopsis.org
BP GO:0008380 RNA splicing IMP Arabidopsis.org
BP GO:0008380 RNA splicing ISS Arabidopsis.org
BP GO:0009651 response to salt stress IEP Arabidopsis.org
BP GO:0009737 response to abscisic acid IEP Arabidopsis.org
BP GO:0010228 vegetative to reproductive phase transition of meristem IMP Arabidopsis.org
BP GO:0010555 response to mannitol IEP Arabidopsis.org
BP GO:0042752 regulation of circadian rhythm IGI Arabidopsis.org
BP GO:0045893 positive regulation of transcription, DNA-templated IDA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR004015 SKI-int_prot_SKIP_SNW-dom 187 346
No external refs found!