AT1G09530 (PIF3, POC1, PAP3)


Aliases : PIF3, POC1, PAP3

Description : phytochrome interacting factor 3


Gene families : OG_01_0000092 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000092_tree ,
OG_02_0000040 (LandPlants) Phylogenetic Tree(s): OG_02_0000040_tree ,
OG_03_0000031 (SeedPlants) Phylogenetic Tree(s): OG_03_0000031_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G09530
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00265010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
AT1G27740 RSL4 root hair defective 6-like 4 0.06 Archaeplastida
AT1G66470 RHD6 ROOT HAIR DEFECTIVE6 0.05 Archaeplastida
AT2G14760 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 Archaeplastida
AT2G43010 SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 0.03 Archaeplastida
AT4G00120 GT140, IND1, IND, EDA33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 Archaeplastida
AT4G33880 RSL2 ROOT HAIR DEFECTIVE 6-LIKE 2 0.05 Archaeplastida
AT5G37800 ATRSL1, RSL1 RHD SIX-LIKE 1 0.05 Archaeplastida
AT5G43175 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
AT5G67110 ALC basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
GSVIVT01018164001 No alias Transcription factor UNE10 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_27869 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os01g02110.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os01g61480.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os02g48060.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os03g10770.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
LOC_Os03g56950.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.02 Archaeplastida
LOC_Os05g04740.2 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os06g06900.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os06g47980.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os07g05010.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.02 Archaeplastida
LOC_Os08g01700.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os08g36740.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os09g28210.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os12g39850.1 No alias transcription factor (bHLH) 0.05 Archaeplastida
LOC_Os12g41650.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.02 Archaeplastida
MA_100071g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_26114g0010 No alias transcription factor (bHLH) 0.03 Archaeplastida
MA_306658g0010 No alias transcription factor (bHLH) 0.03 Archaeplastida
MA_83500g0010 No alias transcription factor (bHLH) 0.08 Archaeplastida
MA_88831g0010 No alias transcription factor (bHLH) 0.03 Archaeplastida
Mp3g17930.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Mp5g09710.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Pp3c10_19020V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
Pp3c14_16620V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c14_20740V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c17_15380V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c25_13740V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
Smo405220 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.01 Archaeplastida
Solyc01g107140.3.1 No alias transcription factor (bHLH) 0.05 Archaeplastida
Solyc02g091440.2.1 No alias transcription factor (bHLH) 0.07 Archaeplastida
Solyc02g093280.2.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Solyc03g044460.1.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Solyc04g077960.1.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Solyc06g008030.3.1 No alias transcription factor (bHLH). PIF red/far-red light... 0.02 Archaeplastida
Solyc12g088380.1.1 No alias transcription factor (bHLH) 0.05 Archaeplastida
Zm00001e005046_P003 No alias transcription factor (bHLH). PIF red/far-red light... 0.03 Archaeplastida
Zm00001e015610_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e017430_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e019392_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e020012_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e020477_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e021883_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e025656_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e027758_P002 No alias transcription factor (bHLH) 0.07 Archaeplastida
Zm00001e034339_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e035422_P001 No alias transcription factor (bHLH) 0.05 Archaeplastida
Zm00001e038765_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
AT1G27740 RSL4 root hair defective 6-like 4 0.04 LandPlants
AT1G66470 RHD6 ROOT HAIR DEFECTIVE6 0.04 LandPlants
AT4G00120 GT140, IND1, IND, EDA33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 LandPlants
AT5G37800 ATRSL1, RSL1 RHD SIX-LIKE 1 0.04 LandPlants
AT5G43175 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 LandPlants
GSVIVT01020814001 No alias External stimuli response.light.red/far red light.PIF... 0.02 LandPlants
Gb_12264 No alias transcription factor (bHLH) 0.01 LandPlants
Gb_27869 No alias transcription factor (bHLH) 0.02 LandPlants
LOC_Os01g02110.1 No alias transcription factor (bHLH) 0.02 LandPlants
LOC_Os01g61480.1 No alias transcription factor (bHLH) 0.02 LandPlants
LOC_Os03g10770.1 No alias transcription factor (bHLH) 0.03 LandPlants
LOC_Os05g46370.1 No alias transcription factor (bHLH) 0.02 LandPlants
LOC_Os06g06900.1 No alias transcription factor (bHLH) 0.02 LandPlants
LOC_Os06g10820.1 No alias transcription factor (bHLH) 0.02 LandPlants
LOC_Os08g01700.1 No alias transcription factor (bHLH) 0.02 LandPlants
LOC_Os08g36740.1 No alias transcription factor (bHLH) 0.02 LandPlants
LOC_Os09g28210.1 No alias transcription factor (bHLH) 0.03 LandPlants
LOC_Os12g39850.1 No alias transcription factor (bHLH) 0.03 LandPlants
MA_100071g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_26114g0010 No alias transcription factor (bHLH) 0.03 LandPlants
MA_306658g0010 No alias transcription factor (bHLH) 0.02 LandPlants
MA_83500g0010 No alias transcription factor (bHLH) 0.06 LandPlants
MA_88831g0010 No alias transcription factor (bHLH) 0.03 LandPlants
Pp3c14_16620V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 LandPlants
Pp3c17_21890V3.1 No alias phytochrome interacting factor 3 0.01 LandPlants
Pp3c1_40040V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 LandPlants
Pp3c2_8960V3.1 No alias phytochrome interacting factor 3 0.01 LandPlants
Solyc01g107140.3.1 No alias transcription factor (bHLH) 0.04 LandPlants
Solyc02g091440.2.1 No alias transcription factor (bHLH) 0.07 LandPlants
Solyc02g093280.2.1 No alias transcription factor (bHLH) 0.04 LandPlants
Solyc03g044460.1.1 No alias transcription factor (bHLH) 0.03 LandPlants
Solyc04g077960.1.1 No alias transcription factor (bHLH) 0.03 LandPlants
Solyc09g005070.1.1 No alias transcription factor (bHLH) 0.02 LandPlants
Solyc12g088380.1.1 No alias transcription factor (bHLH) 0.04 LandPlants
Zm00001e005046_P003 No alias transcription factor (bHLH). PIF red/far-red light... 0.03 LandPlants
Zm00001e015610_P001 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e019392_P001 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e020012_P001 No alias transcription factor (bHLH) 0.04 LandPlants
Zm00001e020477_P001 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e021883_P001 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e025656_P001 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e027758_P002 No alias transcription factor (bHLH) 0.05 LandPlants
Zm00001e032280_P001 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e034339_P001 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e035422_P001 No alias transcription factor (bHLH) 0.03 LandPlants
Zm00001e038765_P001 No alias transcription factor (bHLH) 0.03 LandPlants
Zm00001e041668_P001 No alias transcription factor (bHLH) 0.02 LandPlants
AT1G66470 RHD6 ROOT HAIR DEFECTIVE6 0.03 SeedPlants
LOC_Os02g48060.1 No alias transcription factor (bHLH) 0.01 SeedPlants
LOC_Os03g10770.1 No alias transcription factor (bHLH) 0.02 SeedPlants
LOC_Os06g06900.1 No alias transcription factor (bHLH) 0.01 SeedPlants
LOC_Os08g01700.1 No alias transcription factor (bHLH) 0.02 SeedPlants
LOC_Os09g28210.1 No alias transcription factor (bHLH) 0.01 SeedPlants
LOC_Os12g39850.1 No alias transcription factor (bHLH) 0.02 SeedPlants
MA_100071g0010 No alias no hits & (original description: none) 0.02 SeedPlants
MA_26114g0010 No alias transcription factor (bHLH) 0.02 SeedPlants
MA_83500g0010 No alias transcription factor (bHLH) 0.03 SeedPlants
Solyc02g091440.2.1 No alias transcription factor (bHLH) 0.06 SeedPlants
Solyc02g093280.2.1 No alias transcription factor (bHLH) 0.02 SeedPlants
Solyc03g044460.1.1 No alias transcription factor (bHLH) 0.02 SeedPlants
Solyc10g049780.1.1 No alias transcription factor (bHLH) 0.01 SeedPlants
Solyc12g088790.3.1 No alias transcription factor (bHLH) 0.01 SeedPlants
Zm00001e020012_P001 No alias transcription factor (bHLH) 0.02 SeedPlants
Zm00001e025656_P001 No alias transcription factor (bHLH) 0.02 SeedPlants
Zm00001e027758_P002 No alias transcription factor (bHLH) 0.05 SeedPlants
Zm00001e035422_P001 No alias transcription factor (bHLH) 0.03 SeedPlants
Zm00001e038765_P001 No alias transcription factor (bHLH) 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IDA Interproscan
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of transcription, DNA-templated TAS Interproscan
BP GO:0007165 signal transduction TAS Interproscan
BP GO:0007623 circadian rhythm RCA Interproscan
BP GO:0009630 gravitropism RCA Interproscan
BP GO:0009639 response to red or far red light IMP Interproscan
BP GO:0009704 de-etiolation IMP Interproscan
BP GO:0009740 gibberellic acid mediated signaling pathway IMP Interproscan
BP GO:0010017 red or far-red light signaling pathway IMP Interproscan
BP GO:0010017 red or far-red light signaling pathway RCA Interproscan
BP GO:0031539 positive regulation of anthocyanin metabolic process IMP Interproscan
MF GO:0042802 identical protein binding IPI Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011598 bHLH_dom 347 393
No external refs found!