AT1G72370 (P40, AP40, RPSAA, RP40)

Aliases : P40, AP40, RPSAA, RP40

Description : 40s ribosomal protein SA

Gene families : OG_01_0002645 (Gene family) Phylogenetic Tree(s): OG0002645_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): AT1G72370
Cluster HCCA cluster: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Cre10.g432800 No alias protein.synthesis.ribosomal... 0.25 Gene family
GSVIVT01016695001 No alias protein.synthesis.ribosomal... 0.31 Gene family
LOC_Os03g08440 Os03g0182600 protein.synthesis.ribosomal... 0.1 Gene family
LOC_Os07g42450 Os07g0616600 protein.synthesis.ribosomal... 0.27 Gene family
MA_10436984g0020 No alias protein.synthesis.ribosomal... 0.02 Gene family
MA_112104g0010 No alias protein.synthesis.ribosomal... 0.12 Gene family
Smo36118 PACid_15406812 No description available 0.02 Gene family
Solyc03g019780.3.1 Solyc03g019780.3 protein.synthesis.ribosomal... 0.41 Gene family
Solyc06g072120.3.1 Solyc06g072120.3 protein.synthesis.ribosomal... 0.38 Gene family
Zm00001d006871 GRMZM2G159237 protein.synthesis.ribosomal... 0.34 Gene family
Zm00001d027527 GRMZM2G092719 protein.synthesis.ribosomal... 0.34 Gene family
Zm00001d048253 GRMZM2G099657 protein.synthesis.ribosomal... 0.3 Gene family
Zm00001d048346 GRMZM2G126821 protein.synthesis.ribosomal... 0.37 Gene family

Type GO Term Name Evidence Source
BP GO:0000028 ribosomal small subunit assembly IBA
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
BP GO:0001510 RNA methylation RCA
MF GO:0003735 structural constituent of ribosome ISS
MF GO:0003735 structural constituent of ribosome IBA
CC GO:0005634 nucleus IDA
CC GO:0005737 cytoplasm IDA
CC GO:0005737 cytoplasm ISM
CC GO:0005829 cytosol IDA
CC GO:0005886 plasma membrane IDA
BP GO:0006096 glycolytic process RCA
BP GO:0006407 rRNA export from nucleus IBA
BP GO:0006412 translation ISS
BP GO:0006412 translation IBA
BP GO:0006833 water transport RCA
BP GO:0006970 response to osmotic stress IEP
BP GO:0006972 hyperosmotic response RCA
BP GO:0007030 Golgi organization RCA
BP GO:0009266 response to temperature stimulus RCA
CC GO:0009506 plasmodesma IDA
CC GO:0009507 chloroplast IDA
BP GO:0009651 response to salt stress IEP
BP GO:0009651 response to salt stress RCA
BP GO:0009664 plant-type cell wall organization RCA
CC GO:0015935 small ribosomal subunit IDA
CC GO:0016020 membrane IDA
CC GO:0022626 cytosolic ribosome IDA
CC GO:0022627 cytosolic small ribosomal subunit IDA
CC GO:0022627 cytosolic small ribosomal subunit ISS
CC GO:0030686 90S preribosome IBA
BP GO:0042256 mature ribosome assembly IDA
BP GO:0042545 cell wall modification RCA
BP GO:0046686 response to cadmium ion RCA
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001865 Ribosomal_S2 23 117
IPR001865 Ribosomal_S2 121 186
No external refs found!