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Nbi_g14237 (emb2004)


Aliases : emb2004

Description : not classified & original description: none


Gene families : OG0006225 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006225_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g14237

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00132040 emb2004,... RAN GTPase-activating protein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Adi_g059435 emb2004 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene57665.t1 emb2004, Aspi01Gene57665 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g15959 emb2004 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.29G006400.1 emb2004, Ceric.29G006400 not classified & original description: pacid=50625910... 0.05 OrthoFinder output from all 47 species
GSVIVT01020179001 emb2004 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
LOC_Os06g13050.1 LOC_Os06g13050 Peroxidase 65 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g01858 emb2004 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g04112 emb2004 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp4g21830.1 emb2004 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Ore_g11360 emb2004 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012772 emb2004 not classified & original description: CDS=2191-2943 0.03 OrthoFinder output from all 47 species
Solyc05g006170.4.1 emb2004, Solyc05g006170 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
Spa_g06499 emb2004 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e036062_P001 emb2004, Zm00001e036062 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 399 418
IPR001611 Leu-rich_rpt 507 529
IPR001611 Leu-rich_rpt 258 277
IPR001611 Leu-rich_rpt 537 559
IPR001611 Leu-rich_rpt 483 502
IPR001611 Leu-rich_rpt 452 471
IPR001611 Leu-rich_rpt 226 249
IPR001611 Leu-rich_rpt 339 361
IPR001611 Leu-rich_rpt 371 389
IPR001611 Leu-rich_rpt 424 441
No external refs found!