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  5. Nbi_g14236

Nbi_g14236 (LPA3)


Aliases : LPA3

Description : protein involved in PS-II assembly *(LPA3) & original description: none


Gene families : OG0005820 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005820_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g14236

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00143330 LPA3,... Photosynthesis.photophosphorylation.photosystem... 0.09 OrthoFinder output from all 47 species
AT1G73060 LPA3 Low PSII Accumulation 3 0.06 OrthoFinder output from all 47 species
Adi_g021642 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.02 OrthoFinder output from all 47 species
Aev_g01102 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.02 OrthoFinder output from all 47 species
Aob_g08359 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.03 OrthoFinder output from all 47 species
Aop_g10058 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.1 OrthoFinder output from all 47 species
Azfi_s0472.g072941 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.06 OrthoFinder output from all 47 species
Cba_g08348 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.05 OrthoFinder output from all 47 species
Ceric.04G069900.1 LPA3, Ceric.04G069900 protein involved in PS-II assembly *(LPA3) & original... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000792.24 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Cre03.g184550 LPA3 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Dac_g17623 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g14491 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g15282 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01015969001 LPA3 Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
LOC_Os02g02520.1 LPA3, LOC_Os02g02520 LPA3 protein involved in PS-II assembly 0.05 OrthoFinder output from all 47 species
Len_g30874 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g05945 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.03 OrthoFinder output from all 47 species
Mp1g18310.1 LPA3 LPA3 protein involved in PS-II assembly 0.02 OrthoFinder output from all 47 species
Msp_g19975 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.03 OrthoFinder output from all 47 species
Ore_g06511 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.05 OrthoFinder output from all 47 species
Pir_g01323 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g20972 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g02119 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008847 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.08 OrthoFinder output from all 47 species
Sam_g19563 No alias protein involved in PS-II assembly *(LPA3) & original... 0.04 OrthoFinder output from all 47 species
Sam_g19564 No alias protein involved in PS-II assembly *(LPA3) & original... 0.03 OrthoFinder output from all 47 species
Smo166238 LPA3 Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
Solyc06g068480.3.1 LPA3, Solyc06g068480 LPA3 protein involved in PS-II assembly 0.06 OrthoFinder output from all 47 species
Spa_g01721 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.05 OrthoFinder output from all 47 species
Zm00001e013465_P002 LPA3, Zm00001e013465 LPA3 protein involved in PS-II assembly 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0098809 nitrite reductase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR018962 DUF1995 82 344
No external refs found!