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  5. Nbi_g14100

Nbi_g14100


Description : methionine-tRNA ligase & original description: none


Gene families : OG0005969 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005969_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g14100
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
Aop_g12379 No alias methionine-tRNA ligase & original description: none 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000553.11 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
Cre03.g145967 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
LOC_Os01g60660.1 LOC_Os01g60660 methionine-tRNA ligase 0.02 OrthoFinder output from all 47 species
Pir_g01889 No alias methionine-tRNA ligase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e028847_P003 Zm00001e028847 methionine-tRNA ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034227 tRNA thio-modification IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070070 proton-transporting V-type ATPase complex assembly IEP HCCA
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP HCCA
BP GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR002547 tRNA-bd_dom 254 348
No external refs found!