Nbi_g14004 (RPOB)

Aliases : RPOB

Description : core component *(RpoB) of plastid-encoded RNA polymerase & original description: none

Gene families : OG0005891 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005891_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g14004
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00102p00108130	RPOB,...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.02	OrthoFinder output from all 47 species
AMTR_s00145p00090170	RPOB,...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.02	OrthoFinder output from all 47 species
AMTR_s00626p00011520	RPOB,...	DNA-directed RNA polymerase subunit beta OS=Morus indica	0.02	OrthoFinder output from all 47 species
AMTR_s01499p00009870	RPOB,...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.02	OrthoFinder output from all 47 species
ATCG00190	RPOB	RNA polymerase subunit beta	0.05	OrthoFinder output from all 47 species
Aev_g18557	RPOB	core component *(RpoB) of plastid-encoded RNA polymerase...	0.14	OrthoFinder output from all 47 species
Ceric.02G012900.1	RPOB, Ceric.02G012900	not classified & original description: pacid=50585256...	0.06	OrthoFinder output from all 47 species
Ceric.33G023100.1	RPOB, Ceric.33G023100	not classified & original description: pacid=50607182...	0.11	OrthoFinder output from all 47 species
Ceric.38G009900.1	RPOB, Ceric.38G009900	not classified & original description: pacid=50579505...	0.14	OrthoFinder output from all 47 species
Gb_02251	RPOB	RpoB core component plastid-encoded RNA polymerase	0.09	OrthoFinder output from all 47 species
Gb_06830	RPOB	DNA-directed RNA polymerase subunit beta OS=Pinus...	0.09	OrthoFinder output from all 47 species
Gb_09029	RPOB	DNA-directed RNA polymerase subunit beta OS=Cycas...	0.12	OrthoFinder output from all 47 species
LOC_Os04g16820.1	RPOB, LOC_Os04g16820	RpoB core component plastid-encoded RNA polymerase	0.04	OrthoFinder output from all 47 species
LOC_Os05g22830.1	RPOB, LOC_Os05g22830	DNA-directed RNA polymerase subunit beta OS=Oryza sativa...	0.07	OrthoFinder output from all 47 species
LOC_Os05g22860.1	RPOB, LOC_Os05g22860	DNA-directed RNA polymerase subunit beta OS=Oryza sativa...	0.07	OrthoFinder output from all 47 species
Mp1g13170.1	RPOB	DNA-directed RNA polymerase subunit beta OS=Marchantia...	0.02	OrthoFinder output from all 47 species
Mp6g01430.1	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027472	RPOB	not classified & original description: CDS=1-1728	0.04	OrthoFinder output from all 47 species
Solyc00g500053.1.1	RPOB, Solyc00g500053	DNA-directed RNA polymerase subunit beta OS=Nicotiana...	0.06	OrthoFinder output from all 47 species
Solyc01g095950.1.1	RPOB, Solyc01g095950	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.06	OrthoFinder output from all 47 species
Solyc02g067590.2.1	RPOB, Solyc02g067590	DNA-directed RNA polymerase subunit beta OS=Liriodendron...	0.06	OrthoFinder output from all 47 species
Solyc10g017920.1.1	RPOB, Solyc10g017920	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.07	OrthoFinder output from all 47 species
Solyc12g035870.3.1	RPOB, Solyc12g035870	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015994	chlorophyll metabolic process	IEP	HCCA
BP	GO:0015995	chlorophyll biosynthetic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
BP	GO:0046148	pigment biosynthetic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007642	RNA_pol_Rpb2_2	22	209
IPR007645	RNA_pol_Rpb2_3	270	338
IPR007641	RNA_pol_Rpb2_7	884	958
IPR007120	DNA-dir_RNAP_su2_dom	422	882
IPR007644	RNA_pol_bsu_protrusion	5	255

External Links

No external refs found!

Nbi_g14004 (RPOB)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation