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  5. Nbi_g13988

Nbi_g13988 (ATRAD21.3, SYN4)


Aliases : ATRAD21.3, SYN4

Description : mitotic-specific Kleisin-type component *(SCC1) of cohesin regulator complex & original description: none


Gene families : OG0001004 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001004_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g13988

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00052p00146690 ATRAD21.3, SYN4,... Cell cycle.mitosis and meiosis.sister chromatid... 0.02 OrthoFinder output from all 47 species
Aop_g21978 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.15 OrthoFinder output from all 47 species
Ceric.35G066500.1 ATRAD21.3, SYN4,... mitotic-specific Kleisin-type component *(SCC1) of... 0.12 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.44 SYN3, ATRAD21.2, ATSYN3 Cell cycle.mitosis and meiosis.sister chromatid... 0.01 OrthoFinder output from all 47 species
Cre09.g412450 ATRAD21.3, SYN4 Cell cycle.mitosis and meiosis.sister chromatid... 0.03 OrthoFinder output from all 47 species
Dac_g37942 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.09 OrthoFinder output from all 47 species
GSVIVT01032038001 SYN3, ATRAD21.2, ATSYN3 Cell cycle.mitosis and meiosis.sister chromatid... 0.1 OrthoFinder output from all 47 species
Msp_g31762 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.1 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g015940 ATRAD21.3, SYN4 mitotic-specific Kleisin-type component *(SCC1) of... 0.03 OrthoFinder output from all 47 species
Solyc01g086690.2.1 SYN3, ATRAD21.2,... mitotic-specific Kleisin-type component SCC1 of cohesin... 0.09 OrthoFinder output from all 47 species
Solyc02g093930.4.1 AtRAD21.1, SYN2,... mitotic-specific Kleisin-type component SCC1 of cohesin... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004560 alpha-L-fucosidase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015928 fucosidase activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR006910 Rad21_Rec8_N 1 100
IPR006909 Rad21/Rec8_C_eu 696 744
No external refs found!