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  5. Nbi_g13784

Nbi_g13784 (PTAC12, HMR)


Aliases : PTAC12, HMR

Description : transcriptional coactivator *(HEMERA) & original description: none


Gene families : OG0007916 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007916_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g13784

Target Alias Description ECC score Gene Family Method Actions
AT2G34640 PTAC12, HMR plastid transcriptionally active 12 0.04 OrthoFinder output from all 47 species
Aob_g13152 PTAC12, HMR transcriptional coactivator *(HEMERA) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0068.g036416 PTAC12, HMR transcriptional coactivator *(HEMERA) & original... 0.02 OrthoFinder output from all 47 species
Ceric.13G090100.1 PTAC12, HMR,... transcriptional coactivator *(HEMERA) & original... 0.06 OrthoFinder output from all 47 species
Dcu_g32331 PTAC12, HMR transcriptional coactivator *(HEMERA) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g23157 PTAC12, HMR transcriptional coactivator *(HEMERA) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os01g56350.3 PTAC12, HMR,... PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... 0.05 OrthoFinder output from all 47 species
MA_8815984g0010 PTAC12, HMR PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... 0.04 OrthoFinder output from all 47 species
Mp1g24680.1 PTAC12, HMR PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... 0.03 OrthoFinder output from all 47 species
Ppi_g42137 PTAC12, HMR transcriptional coactivator *(HEMERA) & original... 0.04 OrthoFinder output from all 47 species
Sam_g49988 No alias transcriptional coactivator *(HEMERA) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e019697_P001 PTAC12, HMR,... PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!