AT1G64860 (SIGB, SIG2, SIGA, SIG1, RPOD1)


Aliases : SIGB, SIG2, SIGA, SIG1, RPOD1

Description : sigma factor A


Gene families : OG_01_0005897 (Gene family) Phylogenetic Tree(s): OG0005897_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT1G64860
Cluster HCCA cluster: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01024261001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.07 Gene family
LOC_Os08g06630 Os08g0163400 27.3.85 RNA.regulation of transcription.sigma like plant... 0.05 Gene family
Solyc03g097320.3.1 Solyc03g097320.3 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
Solyc06g072710.3.1 Solyc06g072710.3 27.3.85 RNA.regulation of transcription.sigma like plant... 0.14 Gene family
Zm00001d024507 GRMZM2G006736,... 27.3.85 RNA.regulation of transcription.sigma like plant... 0.03 Gene family
Zm00001d049494 GRMZM2G543629 27.3.85 RNA.regulation of transcription.sigma like plant... 0.07 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Arabidopsis.org
MF GO:0003700 DNA-binding transcription factor activity ISS Arabidopsis.org
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity ISS Arabidopsis.org
MF GO:0005515 protein binding IPI Arabidopsis.org
BP GO:0006352 DNA-templated transcription, initiation IDA Arabidopsis.org
BP GO:0006352 DNA-templated transcription, initiation TAS Arabidopsis.org
BP GO:0006355 regulation of transcription, DNA-templated IDA Arabidopsis.org
BP GO:0006355 regulation of transcription, DNA-templated ISS Arabidopsis.org
BP GO:0006833 water transport RCA Arabidopsis.org
CC GO:0009507 chloroplast IDA Arabidopsis.org
BP GO:0009651 response to salt stress RCA Arabidopsis.org
BP GO:0009750 response to fructose RCA Arabidopsis.org
MF GO:0016987 sigma factor activity ISS Arabidopsis.org
BP GO:0071461 cellular response to redox state IDA Arabidopsis.org
BP GO:0071482 cellular response to light stimulus IEP Arabidopsis.org
BP GO:0080005 photosystem stoichiometry adjustment IDA Arabidopsis.org
BP GO:2001141 regulation of RNA biosynthetic process IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 265 332
IPR007630 RNA_pol_sigma70_r4 438 488
IPR007624 RNA_pol_sigma70_r3 342 412
No external refs found!