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Nbi_g13587 (UPL1)


Aliases : UPL1

Description : E3 ubiquitin ligase *(UPL1) & original description: none


Gene families : OG0001042 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g13587

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00211330 UPL1,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00061p00204480 UPL1 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT1G55860 UPL1 ubiquitin-protein ligase 1 0.03 OrthoFinder output from all 47 species
AT1G70320 UPL2 ubiquitin-protein ligase 2 0.05 OrthoFinder output from all 47 species
Adi_g026954 UPL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g049236 UPL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g052147 UPL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g077941 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g04900 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g16628 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06583 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06863 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g16302 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g40877 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g27017 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene08880.t2 UPL2, Aspi01Gene08880 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0029.g024164 UPL1 E3 ubiquitin ligase *(UPL1) & original description: CDS=1-11178 0.04 OrthoFinder output from all 47 species
Cba_g36312 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.29G011900.1 UPL1, Ceric.29G011900 E3 ubiquitin ligase *(UPL1) & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020556.65 UPL1 E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre01.g012450 UPL1 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Dcu_g02070 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g12771 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21858 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009206001 UPL2 Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
GSVIVT01009208001 UPL2 E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01014697001 UPL1 E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01014698001 UPL1 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Gb_17424 UPL1 monomeric E3 ubiquitin ligase (HECT) 0.02 OrthoFinder output from all 47 species
LOC_Os12g24080.1 UPL2, LOC_Os12g24080 monomeric E3 ubiquitin ligase (HECT) 0.03 OrthoFinder output from all 47 species
Lfl_g05050 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40796 UPL2 not classified & original description: none 0.07 OrthoFinder output from all 47 species
MA_20049g0010 UPL1 monomeric E3 ubiquitin ligase (HECT) 0.04 OrthoFinder output from all 47 species
MA_7295g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_7295g0020 UPL2 E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_75734g0010 UPL1 E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Msp_g48585 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Smo154179 UPL2 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Solyc07g065630.4.1 UPL1, Solyc07g065630 E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Spa_g17792 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29717 UPL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g33388 UPL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g40173 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g21189 UPL1 E3 ubiquiTin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e009321_P001 UPL1, Zm00001e009321 monomeric E3 ubiquitin ligase (HECT) 0.02 OrthoFinder output from all 47 species
Zm00001e017836_P002 UPL1, Zm00001e017836 monomeric E3 ubiquitin ligase (HECT) 0.03 OrthoFinder output from all 47 species
Zm00001e039654_P001 UPL1, Zm00001e039654 monomeric E3 ubiquitin ligase (HECT) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR010309 E3_Ub_ligase_DUF908 84 208
IPR010309 E3_Ub_ligase_DUF908 220 364
IPR015940 UBA 1274 1311
IPR000569 HECT_dom 3386 3696
IPR025527 HUWE1/Rev1_UBM 2671 2702
IPR025527 HUWE1/Rev1_UBM 2630 2662
IPR025527 HUWE1/Rev1_UBM 2596 2619
IPR010314 E3_Ub_ligase_DUF913 427 774
No external refs found!