Nbi_g13540 (LOS1)


Aliases : LOS1

Description : mRNA-translocation factor *(eEF2)) & original description: none


Gene families : OG0000151 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0000151_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g13540
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
Adi_g123643 LOS1 not classified & original description: none 0.01 OrthoFinder output from all 39 species
Aop_g13248 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.03 OrthoFinder output from all 39 species
Aop_g70105 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.03 OrthoFinder output from all 39 species
Azfi_s0796.g087282 LOS1 mRNA-translocation factor *(eEF2)) & original... 0.01 OrthoFinder output from all 39 species
Cba_g22337 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.01 OrthoFinder output from all 39 species
Cba_g22338 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.02 OrthoFinder output from all 39 species
Cba_g36461 LOS1 not classified & original description: none 0.02 OrthoFinder output from all 39 species
Ceric.25G007600.1 LOS1, Ceric.25G007600 mRNA-translocation factor *(eEF2)) & original... 0.05 OrthoFinder output from all 39 species
Dde_g19221 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.05 OrthoFinder output from all 39 species
LOC_Os02g32030.1 LOS1, LOC_Os02g32030 mRNA-translocation factor (eEF2) 0.01 OrthoFinder output from all 39 species
LOC_Os04g02820.1 LOS1, LOC_Os04g02820 mRNA-translocation factor (eEF2) 0.01 OrthoFinder output from all 39 species
Lfl_g12274 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.03 OrthoFinder output from all 39 species
Lfl_g23642 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.02 OrthoFinder output from all 39 species
Msp_g08640 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.04 OrthoFinder output from all 39 species
Ore_g15177 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.01 OrthoFinder output from all 39 species
Pir_g09744 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.02 OrthoFinder output from all 39 species
Pir_g32430 LOS1 not classified & original description: none 0.03 OrthoFinder output from all 39 species
Pnu_g25612 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.01 OrthoFinder output from all 39 species
Ppi_g13071 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.02 OrthoFinder output from all 39 species
Solyc08g062910.4.1 LOS1, Solyc08g062910 mRNA-translocation factor (eEF2) 0.01 OrthoFinder output from all 39 species
Spa_g06405 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.02 OrthoFinder output from all 39 species
Spa_g06406 LOS1 not classified & original description: none 0.03 OrthoFinder output from all 39 species
Tin_g21523 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.01 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0004478 methionine adenosyltransferase activity IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046500 S-adenosylmethionine metabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004161 EFTu-like_2 394 467
IPR005517 Transl_elong_EFG/EF2_IV 611 722
IPR000640 EFG_V-like 724 810
IPR041095 EFG_II 487 549
IPR000795 T_Tr_GTP-bd_dom 17 342
No external refs found!