AT1G08620 (PKDM7D)


Aliases : PKDM7D

Description : Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein


Gene families : OG_01_0001111 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001111_tree ,
OG_02_0001701 (LandPlants) Phylogenetic Tree(s): OG_02_0001701_tree ,
OG_03_0001587 (SeedPlants) Phylogenetic Tree(s): OG_03_0001587_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G08620
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00253500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.07 Archaeplastida
AMTR_s00067p00062020 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 Archaeplastida
Cre03.g169950 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 Archaeplastida
Cre12.g514250 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 Archaeplastida
GSVIVT01019761001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.07 Archaeplastida
GSVIVT01023517001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.15 Archaeplastida
GSVIVT01028351001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.04 Archaeplastida
GSVIVT01037956001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.04 Archaeplastida
Gb_26073 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.05 Archaeplastida
Gb_27431 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.05 Archaeplastida
LOC_Os05g10770.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.04 Archaeplastida
LOC_Os06g51490.1 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10434186g0010 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.09 Archaeplastida
MA_91656g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
Mp6g20340.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.04 Archaeplastida
Mp8g17910.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.09 Archaeplastida
Pp3c21_10100V3.1 No alias JUMONJI 14 0.05 Archaeplastida
Pp3c21_10520V3.1 No alias transcription factor jumonji (jmjC) domain-containing protein 0.02 Archaeplastida
Solyc04g009990.3.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.02 Archaeplastida
Solyc08g081000.3.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.05 Archaeplastida
Zm00001e030938_P001 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.14 Archaeplastida
AMTR_s00067p00062020 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 LandPlants
GSVIVT01023517001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.14 LandPlants
GSVIVT01028351001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 LandPlants
GSVIVT01037956001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.04 LandPlants
Gb_27431 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.04 LandPlants
LOC_Os05g10770.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.04 LandPlants
LOC_Os05g23670.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.02 LandPlants
MA_10434186g0010 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.07 LandPlants
Mp6g20340.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.04 LandPlants
Pp3c16_4220V3.1 No alias Transcription factor jumonji (jmj) family protein / zinc... 0.02 LandPlants
Zm00001e030938_P001 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.14 LandPlants
AMTR_s00067p00062020 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 SeedPlants
GSVIVT01023517001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.13 SeedPlants
GSVIVT01028351001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 SeedPlants
GSVIVT01037956001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 SeedPlants
Gb_27431 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.04 SeedPlants
LOC_Os05g10770.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.04 SeedPlants
LOC_Os05g23670.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.02 SeedPlants
MA_10434186g0010 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.07 SeedPlants
Zm00001e030938_P001 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.14 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of transcription, DNA-templated RCA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated TAS Interproscan
BP GO:0006486 protein glycosylation RCA Interproscan
BP GO:0009630 gravitropism RCA Interproscan
BP GO:0010228 vegetative to reproductive phase transition of meristem RCA Interproscan
BP GO:0010413 glucuronoxylan metabolic process RCA Interproscan
BP GO:0016926 protein desumoylation RCA Interproscan
BP GO:0043687 post-translational protein modification RCA Interproscan
BP GO:0045492 xylan biosynthetic process RCA Interproscan
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Interproscan
BP GO:0050665 hydrogen peroxide biosynthetic process RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003888 FYrich_N 988 1029
IPR004198 Znf_C5HC2 617 667
IPR003349 JmjN 147 180
IPR003889 FYrich_C 1037 1120
IPR003347 JmjC_dom 394 510
No external refs found!