Nbi_g13401 (RFC1, AtRFC1)

Aliases : RFC1, AtRFC1

Description : component *(RFC1) of PCNA sliding clamp loader complex & original description: none

Gene families : OG0004063 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004063_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g13401

Target	Alias	Description	ECC score	Gene Family Method
Als_g07475	RFC1, AtRFC1	component *(RFC1) of PCNA sliding clamp loader complex &...	0.02	OrthoFinder output from all 47 species
Ehy_g30113	RFC1, AtRFC1	component *(RFC1) of PCNA sliding clamp loader complex &...	0.03	OrthoFinder output from all 47 species
GSVIVT01037357001	RFC1, AtRFC1	Cell cycle.interphase.DNA...	0.02	OrthoFinder output from all 47 species
Lfl_g04956	RFC1, AtRFC1	component *(RFC1) of PCNA sliding clamp loader complex &...	0.03	OrthoFinder output from all 47 species
Pir_g49469	RFC1, AtRFC1	component *(RFC1) of PCNA sliding clamp loader complex &...	0.03	OrthoFinder output from all 47 species
Zm00001e011234_P001	RFC1, AtRFC1,...	component RFC1 of PCNA sliding clamp loader complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003689	DNA clamp loader activity	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005663	DNA replication factor C complex	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	IEP	HCCA
MF	GO:0015098	molybdate ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
BP	GO:0015689	molybdate ion transport	IEP	HCCA
BP	GO:0015698	inorganic anion transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	402	513
IPR001357	BRCT_dom	199	273
IPR013725	DNA_replication_fac_RFC1_C	675	838

External Links

No external refs found!

Nbi_g13401 (RFC1, AtRFC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation