AT1G60650


Description : RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain


Gene families : OG_01_0000053 (Gene family) Phylogenetic Tree(s): OG0000053_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT1G60650
Cluster HCCA cluster: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AT1G18630 GR-RBP6 glycine-rich RNA-binding protein 6 0.04 Gene family
GSVIVT01007865001 No alias 27.4 RNA.RNA binding encodes a glycine-rich RNA binding... 0.05 Gene family
GSVIVT01033666001 No alias No description available 0.07 Gene family
LOC_Os03g61990 Os03g0836200 27.4 RNA.RNA binding Zinc finger-containing glycine-rich... 0.03 Gene family
LOC_Os07g08960 Os07g0187300 No description available 0.03 Gene family
LOC_Os07g36490 Os07g0549800 27.4 RNA.RNA binding RNA-binding (RRM/RBD/RNP motifs)... 0.03 Gene family
Solyc01g104840.3.1 Solyc01g104840.3 27.4 RNA.RNA binding Zinc finger-containing glycine-rich... 0.05 Gene family
Solyc03g071560.3.1 Solyc03g071560.3 No description available 0.04 Gene family
Solyc10g047130.2.1 Solyc10g047130.2 27.4 RNA.RNA binding Zinc finger-containing glycine-rich... 0.03 Gene family
Solyc10g081180.2.1 Solyc10g081180.2 27.4 RNA.RNA binding encodes a glycine-rich RNA binding... 0.03 Gene family
Zm00001d007799 GRMZM2G082931 No description available 0.04 Gene family
Zm00001d019041 No alias 27.4 RNA.RNA binding Zinc finger-containing glycine-rich... 0.02 Gene family
Zm00001d033511 GRMZM2G083783 No description available 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IDA Arabidopsis.org
MF GO:0003723 RNA binding ISS Arabidopsis.org
CC GO:0005634 nucleus IDA Arabidopsis.org
BP GO:0009409 response to cold IGI Arabidopsis.org
BP GO:0009409 response to cold IEP Arabidopsis.org
BP GO:0009414 response to water deprivation IEP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000504 RRM_dom 14 83
IPR001878 Znf_CCHC 116 132
No external refs found!