AT1G58060


Description : RNA helicase family protein


Gene families : OG_01_0000624 (Gene family) Phylogenetic Tree(s): OG0000624_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT1G58060
Cluster HCCA cluster: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000786.1 No alias 28.99 DNA.unspecified DEA(D/H)-box RNA helicase family protein 0.01 Gene family
Cpa|evm.model.tig00021094.26 No alias 28.1 DNA.synthesis/chromatin structure RNA helicase... 0.01 Gene family
Cre03.g171650 No alias 28.1 DNA.synthesis/chromatin structure RNA helicase... 0.01 Gene family
Cre06.g266416 No alias 28.1 DNA.synthesis/chromatin structure RNA helicase... 0.02 Gene family
GSVIVT01023271001 No alias 28.1 DNA.synthesis/chromatin structure RNA helicase... 0.07 Gene family
LOC_Os04g35260 Os04g0432200,... 28.1 DNA.synthesis/chromatin structure RNA helicase... 0.03 Gene family
LOC_Os10g33275 Os10g0471350 28.1 DNA.synthesis/chromatin structure RNA helicase... 0.04 Gene family
MA_10437209g0010 No alias 28.1 DNA.synthesis/chromatin structure DEA(D/H)-box RNA... 0.04 Gene family
MA_291146g0010 No alias 28.1 DNA.synthesis/chromatin structure RNA helicase... 0.02 Gene family
Smo173775 PACid_15417164 No description available 0.03 Gene family
Smo177444 PACid_15404071 28.1 DNA.synthesis/chromatin structure RNA helicase... 0.03 Gene family
Solyc01g006710.3.1 Solyc01g006710.3 28.1 DNA.synthesis/chromatin structure DEA(D/H)-box RNA... 0.06 Gene family
Solyc01g006970.3.1 Solyc01g006970.3 28.1 DNA.synthesis/chromatin structure RNA helicase... 0.06 Gene family
Solyc01g103690.3.1 Solyc01g103690.3 28.1 DNA.synthesis/chromatin structure RNA helicase... 0.02 Gene family
Zm00001d032735 GRMZM2G399212 28.1 DNA.synthesis/chromatin structure RNA helicase... 0.05 Gene family

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Arabidopsis.org
MF GO:0004386 helicase activity ISS Arabidopsis.org
MF GO:0005524 ATP binding ISS Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 1099 1199
IPR001650 Helicase_C 905 1034
IPR011709 DUF1605 1290 1387
IPR011545 DEAD/DEAH_box_helicase_dom 626 786
No external refs found!