AT1G56070 (LOS1)


Aliases : LOS1

Description : Ribosomal protein S5/Elongation factor G/III/V family protein


Gene families : OG_01_0001646 (Gene family) Phylogenetic Tree(s): OG0001646_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT1G56070
Cluster HCCA cluster: Cluster_251

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021464.39 No alias 29.2.4 protein.synthesis.elongation encodes a... 0.02 Gene family
Cre12.g516200 No alias 29.2.4 protein.synthesis.elongation encodes a... 0.03 Gene family
GSVIVT01020404001 No alias 29.2.4 protein.synthesis.elongation encodes a... 0.04 Gene family
LOC_Os02g32030 Os02g0519900 29.2.4 protein.synthesis.elongation encodes a... 0.1 Gene family
Smo411087 PACid_15405592 No description available 0.02 Gene family
Solyc08g062910.3.1 Solyc08g062910.3 29.2.4 protein.synthesis.elongation encodes a... 0.06 Gene family
Solyc08g062915.1.1 Solyc08g062915.1 29.2.4 protein.synthesis.elongation encodes a... 0.16 Gene family
Zm00001d012770 No alias 29.2.4 protein.synthesis.elongation encodes a... 0.19 Gene family

Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity ISS Arabidopsis.org
MF GO:0005507 copper ion binding IDA Arabidopsis.org
CC GO:0005730 nucleolus IDA Arabidopsis.org
CC GO:0005737 cytoplasm ISM Arabidopsis.org
CC GO:0005774 vacuolar membrane IDA Arabidopsis.org
CC GO:0005829 cytosol IDA Arabidopsis.org
CC GO:0005886 plasma membrane IDA Arabidopsis.org
MF GO:0008135 translation factor activity, RNA binding ISS Arabidopsis.org
BP GO:0009409 response to cold IMP Arabidopsis.org
CC GO:0009506 plasmodesma IDA Arabidopsis.org
CC GO:0009507 chloroplast IDA Arabidopsis.org
BP GO:0009735 response to cytokinin IDA Arabidopsis.org
CC GO:0016020 membrane IDA Arabidopsis.org
CC GO:0048046 apoplast IDA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000640 EFG_V-like 724 810
IPR000795 TF_GTP-bd_dom 17 342
IPR004161 EFTu-like_2 394 467
IPR005517 Transl_elong_EFG/EF2_IV 611 721
No external refs found!