MA_59360g0010


Description : component MSH2 of MSH2-x mismatch repair heterodimers


Gene families : OG_01_0004906 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004906_tree ,
OG_02_0005790 (LandPlants) Phylogenetic Tree(s): OG_02_0005790_tree ,
OG_03_0010054 (SeedPlants) Phylogenetic Tree(s): OG_03_0010054_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_59360g0010
Cluster HCCA: Cluster_540

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00236950 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.mismatch... 0.12 Archaeplastida
AT3G18524 ATMSH2, MSH2 MUTS homolog 2 0.12 Archaeplastida
Cpa|evm.model.tig00001224.8 No alias DNA damage response.DNA repair mechanisms.mismatch... 0.06 Archaeplastida
Cre01.g003463 No alias DNA mismatch repair protein MSH2 OS=Zea mays 0.1 Archaeplastida
GSVIVT01008235001 No alias DNA damage response.DNA repair mechanisms.mismatch... 0.02 Archaeplastida
Gb_33909 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.09 Archaeplastida
Mp4g08420.1 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.12 Archaeplastida
Pp3c22_850V3.1 No alias MUTS homolog 2 0.07 Archaeplastida
Solyc06g069230.3.1 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.05 Archaeplastida
Zm00001e035455_P001 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.05 Archaeplastida
AMTR_s00007p00236950 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.mismatch... 0.1 LandPlants
AT3G18524 ATMSH2, MSH2 MUTS homolog 2 0.09 LandPlants
GSVIVT01008235001 No alias DNA damage response.DNA repair mechanisms.mismatch... 0.02 LandPlants
Gb_33909 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.07 LandPlants
Mp4g08420.1 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.09 LandPlants
Pp3c22_850V3.1 No alias MUTS homolog 2 0.06 LandPlants
Solyc06g069230.3.1 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.04 LandPlants
Zm00001e035455_P001 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.04 LandPlants
AMTR_s00007p00236950 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.mismatch... 0.07 SeedPlants
AT3G18524 ATMSH2, MSH2 MUTS homolog 2 0.08 SeedPlants
GSVIVT01008235001 No alias DNA damage response.DNA repair mechanisms.mismatch... 0.02 SeedPlants
Gb_33909 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.07 SeedPlants
LOC_Os05g19270.1 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.02 SeedPlants
Solyc06g069230.3.1 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.03 SeedPlants
Zm00001e035455_P001 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007696 DNA_mismatch_repair_MutS_core 213 520
IPR007861 DNA_mismatch_repair_MutS_clamp 382 478
IPR007860 DNA_mmatch_repair_MutS_con_dom 57 194
No external refs found!