Nbi_g12496


Description : component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent RNase P complex & original description: none


Gene families : OG0000963 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0000963_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g12496

Target Alias Description ECC score Gene Family Method Actions
Als_g40513 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
Aop_g09265 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.02 OrthoFinder output from all 39 species
Azfi_s0078.g038216 No alias not classified & original description: CDS=139-894 0.01 OrthoFinder output from all 39 species
Dac_g30258 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.03 OrthoFinder output from all 39 species
Dac_g44037 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.01 OrthoFinder output from all 39 species
Dde_g02087 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.01 OrthoFinder output from all 39 species
Dde_g27096 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
Tin_g03880 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.01 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007029 endoplasmic reticulum organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP HCCA
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!