Nbi_g12383

Description : component *(Sec24) of Sec23/24 cargo adaptor subcomplex & original description: none

Gene families : OG0003525 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003525_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g12383
Cluster	HCCA: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00061p00084390	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.09	OrthoFinder output from all 47 species
AT3G44340	CEF	clone eighty-four	0.03	OrthoFinder output from all 47 species
AT4G32640	No alias	Sec23/Sec24 protein transport family protein	0.05	OrthoFinder output from all 47 species
Adi_g059790	No alias	component *(Sec24) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Aev_g01583	No alias	component *(Sec24) of Sec23/24 cargo adaptor subcomplex...	0.04	OrthoFinder output from all 47 species
Ala_g05132	No alias	component *(Sec24) of Sec23/24 cargo adaptor subcomplex...	0.04	OrthoFinder output from all 47 species
Als_g15380	No alias	component *(Sec24) of Sec23/24 cargo adaptor subcomplex...	0.11	OrthoFinder output from all 47 species
Aob_g10600	No alias	component *(Sec24) of Sec23/24 cargo adaptor subcomplex...	0.04	OrthoFinder output from all 47 species
Aop_g04939	No alias	component *(Sec24) of Sec23/24 cargo adaptor subcomplex...	0.05	OrthoFinder output from all 47 species
Aspi01Gene00682.t1	CEF, Aspi01Gene00682	component *(Sec24) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Ceric.16G039000.1	Ceric.16G039000	component *(Sec24) of Sec23/24 cargo adaptor subcomplex...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000829.3	CEF	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.05	OrthoFinder output from all 47 species
Cre01.g035850	CEF	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.05	OrthoFinder output from all 47 species
Dcu_g06456	No alias	component *(Sec24) of Sec23/24 cargo adaptor subcomplex...	0.05	OrthoFinder output from all 47 species
Dcu_g06486	No alias	component *(Sec24) of Sec23/24 cargo adaptor subcomplex...	0.04	OrthoFinder output from all 47 species
GSVIVT01014611001	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.1	OrthoFinder output from all 47 species
Gb_38621	CEF	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.06	OrthoFinder output from all 47 species
LOC_Os11g29200.1	CEF, LOC_Os11g29200	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.03	OrthoFinder output from all 47 species
LOC_Os12g24250.1	CEF, LOC_Os12g24250	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.1	OrthoFinder output from all 47 species
Len_g03398	No alias	component *(Sec24) of Sec23/24 cargo adaptor subcomplex...	0.09	OrthoFinder output from all 47 species
Lfl_g26302	No alias	component *(Sec24) of Sec23/24 cargo adaptor subcomplex...	0.11	OrthoFinder output from all 47 species
MA_45050g0010	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.04	OrthoFinder output from all 47 species
MA_635762g0010	No alias	Protein transport protein Sec24-like At4g32640...	0.02	OrthoFinder output from all 47 species
MA_923164g0010	CEF	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.05	OrthoFinder output from all 47 species
Mp7g13350.1	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.05	OrthoFinder output from all 47 species
Pir_g11399	No alias	component *(Sec24) of Sec23/24 cargo adaptor subcomplex...	0.05	OrthoFinder output from all 47 species
Ppi_g06491	No alias	component *(Sec24) of Sec23/24 cargo adaptor subcomplex...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011262	CEF	component *(Sec24) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Smo140536	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.08	OrthoFinder output from all 47 species
Solyc06g084210.3.1	CEF, Solyc06g084210	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.06	OrthoFinder output from all 47 species
Spa_g52344	No alias	component *(Sec24) of Sec23/24 cargo adaptor subcomplex...	0.09	OrthoFinder output from all 47 species
Tin_g10861	No alias	component *(Sec24) of Sec23/24 cargo adaptor subcomplex...	0.08	OrthoFinder output from all 47 species
Zm00001e021459_P002	CEF, Zm00001e021459	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.14	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030127	COPII vesicle coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0019829	ATPase-coupled monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	HCCA
CC	GO:0030131	clathrin adaptor complex	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
MF	GO:0031267	small GTPase binding	IEP	HCCA
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	HCCA
MF	GO:0042625	ATPase-coupled ion transmembrane transporter activity	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	HCCA
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	HCCA
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006900	Sec23/24_helical_dom	839	935
IPR012990	Sec23_24_beta_S	744	827
IPR006896	Sec23/24_trunk_dom	500	738
IPR007123	Gelsolin-like_dom	961	1028
IPR006895	Znf_Sec23_Sec24	425	463

External Links

No external refs found!

Nbi_g12383

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation