AT1G50500 (VPS53, HIT1, ATVPS53)


Aliases : VPS53, HIT1, ATVPS53

Description : Membrane trafficking VPS53 family protein


Gene families : OG_01_0003990 (Gene family) Phylogenetic Tree(s): OG0003990_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT1G50500
Cluster HCCA cluster: Cluster_251

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020554.46 No alias 31.4 cell.vesicle transport encodes a member of VPS53... 0.02 Gene family
GSVIVT01016094001 No alias 31.4 cell.vesicle transport encodes a member of VPS53... 0.06 Gene family
LOC_Os01g67880 Os01g0906200 31.4 cell.vesicle transport encodes a member of VPS53... 0.05 Gene family
Solyc04g049490.3.1 Solyc04g049490.3 31.4 cell.vesicle transport encodes a member of VPS53... 0.08 Gene family

Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization RCA Arabidopsis.org
BP GO:0000911 cytokinesis by cell plate formation RCA Arabidopsis.org
MF GO:0005215 transporter activity ISS Arabidopsis.org
CC GO:0005739 mitochondrion IDA Arabidopsis.org
CC GO:0005886 plasma membrane ISM Arabidopsis.org
BP GO:0006810 transport ISS Arabidopsis.org
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER ISS Arabidopsis.org
BP GO:0006970 response to osmotic stress IMP Arabidopsis.org
BP GO:0009408 response to heat IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007234 Vps53_N 2 424
No external refs found!