Nbi_g12082 (54CP, SRP54CP, CPSRP54, FFC)

Aliases : 54CP, SRP54CP, CPSRP54, FFC

Description : component *(cpSRP54) of thylakoid membrane SRP insertion system & original description: none

Gene families : OG0002699 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0002699_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g12082

Target	Alias	Description	ECC score	Gene Family Method
Aev_g05995	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.02	OrthoFinder output from all 39 species
Aob_g00097	No alias	not classified & original description: none	0.02	OrthoFinder output from all 39 species
Aop_g31519	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.05	OrthoFinder output from all 39 species
Aspi01Gene03019.t1	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.01	OrthoFinder output from all 39 species
Azfi_s0352.g066605	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.05	OrthoFinder output from all 39 species
Cba_g29373	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.02	OrthoFinder output from all 39 species
Ceric.03G060800.1	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.04	OrthoFinder output from all 39 species
Dcu_g11802	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.02	OrthoFinder output from all 39 species
Dde_g10157	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.02	OrthoFinder output from all 39 species
Len_g09132	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.02	OrthoFinder output from all 39 species
Msp_g47300	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.07	OrthoFinder output from all 39 species
Ppi_g12402	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.03	OrthoFinder output from all 39 species
Sacu_v1.1_s0079.g017848	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.03	OrthoFinder output from all 39 species
Sacu_v1.1_s0444.g027392	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.03	OrthoFinder output from all 39 species
Spa_g21337	54CP, SRP54CP,...	component *(cpSRP54) of thylakoid membrane SRP insertion...	0.01	OrthoFinder output from all 39 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	None	Extended
BP	GO:0006613	cotranslational protein targeting to membrane	None	Extended
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008312	7S RNA binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0045047	protein targeting to ER	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
CC	GO:0048500	signal recognition particle	IEA	Interproscan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0070972	protein localization to endoplasmic reticulum	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004109	coproporphyrinogen oxidase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013822	Signal_recog_particl_SRP54_hlx	106	183
IPR000897	SRP54_GTPase_dom	201	396
IPR004125	Signal_recog_particle_SRP54_M	427	526

External Links

No external refs found!

Nbi_g12082 (54CP, SRP54CP, CPSRP54, FFC)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation