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  5. Nbi_g12014

Nbi_g12014


Description : E3 ubiquitin ligase *(RMA/MUSE) & original description: none


Gene families : OG0000266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000266_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g12014
Cluster HCCA: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
Aop_g05095 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene14817.t1 Aspi01Gene14817 E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene43421.t1 Aspi01Gene43421 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0032.g024585 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: CDS=1-897 0.04 OrthoFinder output from all 47 species
Ceric.19G013000.1 Ceric.19G013000 E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.18 OrthoFinder output from all 47 species
Ceric.20G005100.1 Ceric.20G005100 E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.26 OrthoFinder output from all 47 species
LOC_Os01g61420.1 LOC_Os01g61420 RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Len_g01102 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.13 OrthoFinder output from all 47 species
Len_g03115 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.17 OrthoFinder output from all 47 species
Ppi_g62388 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.14 OrthoFinder output from all 47 species
Spa_g10565 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.25 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA

No InterPro domains available for this sequence

No external refs found!